The CoreMarketplace: Stanford Functional Genomics Facility

The Stanford Functional Genomics Facility (SFGF) provides high-throughput sequencing (Illumina HiSeq 4000, NextSeq 500, MiSeq and MiniSeq), microarray gene expression and genotyping services (Affymetrix, Agilent and Illumina) to the Stanford research community and outside institutions. The facility also provides 24/7 access to instruments, equipment and software utilized within the genomics field.

Facility Policies

Services are offerred outside of Stanford Medicine

Consulting is offerred outside of Stanford Medicine

(To see more facility information, click the in the upper right)

Services offered:

Assays and Measurements

Computational - Bioinformatics

Copy Number Variation (CNV)

Molecular Library Services

Nucleic Acid Extraction

Sequencing - Capillary Sequencing

Sequencing - DNA Sequencing

Sequencing - Next Generation Sequencing (NGS)

Shared Instrumentation Oversight & Maintenance

Western Blot

Facility Equipment

No additional equipment has been listed

(To see more facility information, click the in the upper right)

Publications

Publications associated with this facility (Click To View):

1.) Pham THM, Xue Y, Brewer SM, Bernstein KE, Quake SR, Monack DM (2023 Jan 6). Single-cell profiling identifies ACE(+) granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances, 9(1), eadd4333. . PMID: 36608122.

2.) Hu J, Boeri M, Sozzi G, Liu D, Marchianò A, Roz L, Pelosi G, Gatter K, Pastorino U, Pezzella F (2015 Aug). Gene Signatures Stratify Computed Tomography Screening Detected Lung Cancer in High-Risk Populations. EBioMedicine, 2(8), 831-40. . PMID: 26425689.

3.) Xie H, Zhao Y, Caramuta S, Larsson C, Lui WO (2012). miR-205 expression promotes cell proliferation and migration of human cervical cancer cells. PloS one, 7(10), e46990. . PMID: 23056551.

4.) Liu D, Hu J, Agorreta J, Cesario A, Zhang Y, Harris AL, Gatter K, Pezzella F (2010 Oct 28). Tumor necrosis factor receptor-associated protein 1(TRAP1) regulates genes involved in cell cycle and metastases. Cancer letters, 296(2), 194-205. doi: 10.1016/j.canlet.2010.04.017. PMID: 20471161.

5.) Granjon A, Gustin MP, Rieusset J, Lefai E, Meugnier E, Güller I, Cerutti C, Paultre C, Disse E, Rabasa-Lhoret R, Laville M, Vidal H, Rome S (2009 Nov). The microRNA signature in response to insulin reveals its implication in the transcriptional action of insulin in human skeletal muscle and the role of a sterol regulatory element-binding protein-1c/myocyte enhancer factor 2C pathway. Diabetes, 58(11), 2555-64. . PMID: 19720801.

6.) van Baarsen LG, Vosslamber S, Tijssen M, Baggen JM, van der Voort LF, Killestein J, van der Pouw Kraan TC, Polman CH, Verweij CL (2008 Apr 2). Pharmacogenomics of interferon-beta therapy in multiple sclerosis: baseline IFN signature determines pharmacological differences between patients. PloS one, 3(4), e1927. . PMID: 18382694.

7.) Chan DA, Krieg AJ, Turcotte S, Giaccia AJ (2007). HIF gene expression in cancer therapy. Methods in enzymology, 435(), 323-45. . PMID: 17998061.

8.) Ekelund E, Saaf A, Tengvall-Linder M, Melen E, Link J, Barker J, Reynolds NJ, Meggitt SJ, Kere J, Wahlgren CF, Pershagen G, Wickman M, Nordenskjold M, Kockum I, Bradley M (2006 Jun). Elevated expression and genetic association links the SOCS3 gene to atopic dermatitis. American journal of human genetics, 78(6), 1060-5. . PMID: 16685656.

(To see more facility information, click the in the upper right)

Associations

ABRF

Association of Biomolecular Resource Facilities

Cancer Center

WACD

Western Association of Core Directors

(To see more facility information, click the in the upper right)

Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=200
https://coremarketplace.org/RRID:SCR_002050

Institution

Institution ROR ID: https://ror.org/03mtd9a03

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

Service, center, Stanford School of Medicine, genomics, sequencing, microarray, gene, expression, DNA, RNA, genotyping, PCR, RTPCR, plasmid, printing

Resource Type:

data or information resource, experimental protocol, material analysis service, core facility, access service resource, analysis service resource, portal, service resource, production service resource, narrative resource, organization portal

Citation:

Stanford University Functional Genomics Core Facility (RRID:SCR_002050)

(To see more facility information, click the in the upper right)

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Stanford Functional Genomics Facility (Genomics / Genome Analysis and Technologies)

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Facility RRID

Facility Details

Facility Policies

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

ABRF

Cancer Center

WACD

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

Add/Edit Facility Profile

Adding a facility profile to the CoreMarketplace will automatically assign your facility an RRID (more info). You will be notified of your RRID by email once it has been assigned.

Please enter the following information:

Contact John Coller

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Stanford Functional Genomics Facility

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