The CoreMarketplace: OHSU Massively Parallel Sequencing Shared Resource

Provides RNA-sequencing for gene expression analysis, DNA resequencing for single nucleotide polymorphism discovery, DNA resequencing for copy number variation discovery, ChiP-sequencing for promoter analysis, DNA methylation analysis, De novo sequencing for unique genomes, Sequence capture service. Offers sequencing including genome resequencing, transcriptome analysis, miRNA analysis, and prometer analysis via ChIP-seq.

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Services offered:

Facility Equipment

No additional equipment has been listed

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Publications

Publications associated with this facility (Click To View):

1.) Danoff JS, Lillard TS, Myatt L, Connelly JJ, Erickson EN (2024 Oct). A Common OXTR Risk Variant Alters Regulation of Gene Expression by DNA Hydroxymethylation in Pregnant Human Myometrium. Reproductive sciences (Thousand Oaks, Calif.), 31(10), 3132-3138. . PMID: 38862858.

2.) Li Z, Metzger Filho O, Viale G, dell’Orto P, Russo L, Goyette MA, Kamat A, Yardley DA, Gupta Abramson V, Arteaga CL, Spring LM, Chiotti K, Halsey C, Waks AG, King TA, Lester SC, Bellon JR, Winer EP, Spellman PT, Krop IE, Polyak K (2024 Feb 1). HER2 heterogeneity and treatment response–associated profiles in HER2-positive breast cancer in the NCT02326974 clinical trial The Journal of Clinical Investigation, 134(7), e176454. . PMCID: 10977978.

3.) Khan MR, Akbari A, Nicholas TJ, Castillo-Madeen H, Ajmal M, Haq TU, Laan M, Quinlan AR, Ahuja JS, Shah AA, Conrad DF (2023 Dec 10). Genome sequencing of Pakistani families with male infertility identifies deleterious genotypes in SPAG6, CCDC9, TKTL1, TUBA3C, and M1AP. Andrology, (), . doi: 10.1111/andr.13570. PMID: 38073178.

4.) Shah VM, Rizvi S, Smith A, Tsuda M, Krieger M, Pelz C, MacPherson K, Eng J, Chin K, Munks MW, Daniel CJ, Al-Fatease A, Yardimci GG, Langer EM, Brody JR, Sheppard BC, Alani AW, Sears RC (2023 Nov 21). Micelle-Formulated Juglone Effectively Targets Pancreatic Cancer and Remodels the Tumor Microenvironment. Pharmaceutics, 15(12), . . PMID: 38139993.

5.) Erickson T, Biggers WP 3rd, Williams K, Butland SE, Venuto A (2023 Jun 16). Regionalized Protein Localization Domains in the Zebrafish Hair Cell Kinocilium. Journal of developmental biology, 11(2), . . PMID: 37367482.

6.) Vermehren-Schmaedick A, Huang JY, Levinson M, Pomaville MB, Reed S, Bellus GA, Gilbert F, Keren B, Heron D, Haye D, Janello C, Makowski C, Danhauser K, Fedorov LM, Haack TB, Wright KM, Cohen MS (2021 May 22). Characterization of PARP6 Function in Knockout Mice and Patients with Developmental Delay. Cells, 10(6), . . PMID: 34067418.

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Associations

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=1556
https://coremarketplace.org/RRID:SCR_009984

Institution

Institution ROR ID: https://ror.org/009avj582

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

RNA-sequencing for gene expression analysis, DNA resequencing for single nucleotide polymorphism discovery, DNA resequencing for copy number variation discovery, ChiP-sequencing for promoter analysis, DNA methylation analysis, De novo sequencing for unique genomes, USEDit

Resource Type:

service resource, access service resource, core facility

Citation:

OHSU Massively Parallel Sequencing Shared Resource Core Facility (RRID:SCR_009984)

OHSU Massively Parallel Sequencing Shared Resource

Primary Contact:

Facility RRID

Facility Details

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Facility Profile QR Code (links to this profile)

(To see more facility information, click the in the upper right)

Contact Robert Searles

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OHSU Massively Parallel Sequencing Shared Resource

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