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All Facilities >> Donald Danforth Plant Science Center >> Donald Danforth Plant Science Center Data Science Core Facility
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Noah Fahlgren
Core Facility provides infrastructure for high-performance computing and data storage (local and cloud). Services include access and training for use of high-performance computing resources, data analysis and visualization, data integration, statistical analysis, and image analysis.
Last Updated: 10/21/2025
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https://coremarketplace.org/?FacilityID=5613Institution
Institution ROR ID: https://ror.org/000cyem11Keywords:
ABRF, high-performance computing and data storage, data analysis and visualization, data integration, statistical analysis, image analysis, .
Resource Type:
service resource, access service resource, core facility
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Donald Danforth Plant Science Center Data Science Core Facility (RRID:SCR_027573)
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Imaging (Cell, Molecular, PET, Translational)
Eduardo Rosa-Molinar, Ph.D., FAAAS
4515 McKinley Avenue
Washington University Center for Cellular Imaging (WUCCI) is in the basement of the Debra and George W. Couch III Biomedical Research Building
Saint Louis, MO 63110 - United States
RRID:SCR_028069
Overview of the WUCCI
The Washington University Center for Cellular Imaging (WUCCI) is a university‑wide shared technology and innovation hub dedicated to advancing multi‑scale imaging in biomedical research. Established in 2015 through collaboration between the Departments of Neuroscience and Cell Biology & Physiology, the Center provides access to advanced imaging technologies, expert consultation, training, and collaborative partnerships across the School of Medicine and Washington University research community.
WUCCI’s mission is to support discovery in cellular structure, function, and human disease by providing:
- Reliable and affordable access to state‑of‑the‑art light and electron microscopy platforms
- Professional guidance in experimental design, sample preparation, data acquisition, and quantitative image analysis
- Hands‑on training in basic and advanced imaging methodologies
- Development and application of emerging imaging technologies and workflows
- A collaborative environment that integrates imaging, computation, and biological research
WUCCI‑Couch Facility
The primary WUCCI site is located in the Debra and George W. Couch III Biomedical Research Building and encompasses ~7,600 sq ft of purpose‑designed microscopy, sample‑prep, and analysis space.
Key Facility Features:
Light Microscopy Suites:
- Eighteen imaging workstations across three dedicated rooms
- Confocal, resonant‑scanning confocal, spinning‑disk confocal, and super‑resolution systems (e.g., Nikon N‑SIM)
- Live‑cell imaging platforms with advanced laser lines, spectral detection, and environmental control
Electron Microscopy Suites:
- Multiple electron microscopes supporting a wide range of voltages and imaging applications
- Full EM sample‑prep infrastructure, including freezing labs, wet‑lab prep spaces, and resin‑ and cryogenic ultramicrotomy suites
Additional Infrastructure:
- Tissue culture suite
- Short‑term live‑animal imaging space (<24 hrs)
- Ten‑desk high‑performance image‑analysis room
- Equipment‑maintenance workshop
- Staff offices, multi‑purpose classroom, and user break area
Capabilities:
- Light microscopy, electron microscopy, and multi‑modal workflows
- Correlated light and electron microscopy (CLEM)
- Correlated volume electron microscopy (cvEM)
- Whole‑cell and tissue ultrastructure mapping
- Protein and probe localization
- High‑resolution 3D ultrastructural dataset acquisition
- Integration of dynamic fluorescence imaging with ultrastructural EM data
WUCCI‑Neuro at The Fort (2023–Present)
Opened in 2023 within the Fort Neuroscience Research Building, WUCCI‑Neuro expands capacity for advanced neuroscience‑focused imaging.
Facility Highlights:
- ~2,600 sq ft optimized for neurobiology research
- Six optical systems including confocal, resonant‑scanning confocal, spinning‑disk confocal, and a dedicated multiphoton in‑vivo imaging suite
- Tissue culture facilities
- Wet‑lab space for tissue clearing workflows
- Four high‑performance analysis workstations
Training & Education:
- Introductory and advanced training for light, electron, and multi‑modal systems
- Workshops, symposia, and user‑group meetings
- Specialized programs including cryo‑EM and quantitative imaging
Research Support:
- Assistance with experimental design, sample preparation, and data acquisition
- Support for fixed‑cell and live‑cell imaging
- Advanced computational analysis
- Development of custom workflows and visualization strategies
Facility Access:
- Instrument scheduling and service requests via iLab
- 24/7 access for trained users
- Weekday staff support
History, Growth & Vision:
- 2015 — WUCCI was established as a centralized imaging center
- 2023 — Opening of WUCCI‑Neuro at The Fort
- 2024–present — Ongoing expansion of imaging systems, computational resources, and educational programs
Summary Statement:
WUCCI provides comprehensive imaging technologies, expertise, and training to enable investigators to explore cellular and tissue architecture across scales. Through integrated light, electron, cryogenic, and correlative imaging—combined with computational and educational resources—WUCCI accelerates discovery and deepens understanding of human health and disease.
This facility provides services outside its institution
This facility provides consulting outside its institution
03/08/2026
RRID:SCR_027393
Core services range from simple protein identification to quantification of proteins (relative and absolute) through bottom-up proteomics analyses. Offers intact, native, and top-down proteomics analyses. Provides comprehensive global quantitative analysis of post-translational modifications (PTMs) such as phosphorylation, ubiquitination, acetylation, and methylation, as well as epiproteomics histone PTM assays.
This facility does not provide services outside its institution
This facility does not consult outside its institution
09/03/2025
Laura Fischer
https://regenerativemedicine.wustl.edu/cores/human-cells-tissues-and-organoids-core/
RRID:SCR_027185
Core provides training and expertise on culturing human pluripotent cells and their downstream derivatives.
This facility does not provide services outside its institution
This facility does not consult outside its institution
07/09/2025
Cody Bagnall
https://www.danforthcenter.org/our-work/core-facilities/#field-research-site
RRID:SCR_027897
Field Research Site is a core facility providing scientists with advanced field research infrastructure and crop management capabilities. Offers diverse agricultural practices including full tillage, no-till systems, irrigation, precision spraying, and plot planting for row crops and specialty crops. On-site resources include multiple drying rooms, walk-in freezers, and dedicated processing spaces for soil, tissue, and seed samples.
This facility does not provide services outside its institution
This facility does not consult outside its institution
01/26/2026
Amino Acid Analysis
Assay Development
Data Analysis
Elemental Profiling (ionomics)
GC
HPLC
HRAM Mass Spectrometry
Mass Spectrometry
Metabolomics
Metabolomics Platform
Phosphoproteomics
Phytohormone Analysis
Protein Extraction/Purification
Proteomics
Sample Preparation
Sequencing - Protein Sequencing
Shared Instrumentation Oversight & Maintenance
Untargeted Mass Spectrometry
Mass Spectrometry
Russell Williams
975 North Warson Rd
St. Louis, MO 63132 - United States of America
RRID:SCR_001047
Other CIDs:DBI-1427621
DBI-1827534
The Danforth Center‘s Bioanalytical Chemistry Facility develops new tools and provides high quality sample analysis in proteomics, metabolomics, and ionomics (elemental profiling) using mass spectrometry and related analytical techniques.
For info on capabilities and instrumentation - please visit:
www.danforthcenter.org/BCF
This facility provides services outside its institution
This facility provides consulting outside its institution
09/19/2025
Consultation
Containment
Crossing
Plant Growth
Project Management
Protocol Development
Seed Processing
Seed Storage
Training
Transgenics
Kevin Reilly
975 N Warson Rd.
St. Louis, MO 63132 - United States
https://www.danforthcenter.org/our-work/core-facilities/plant-growth/
RRID:SCR_024902
The Integrated Plant Growth Facility (PGF) is a state-of-the-art research crop cultivation facility, offering scientists a variety of advanced plant growth spaces and expert horticultural services. The PGF spans a total of 94,401 square feet. This includes a 80,805 sq.ft Greenhouse Complex as well as 13,596 sq.ft of Growth Chamber facility and Headhouse space. The PGF has 50 individual greenhouse compartments and 100 growth chambers and growth rooms.
The PGF’s research-grade greenhouses are designed for cultivation and containment of research crops, including regulated and protected plant materials. Greenhouse compartment sizes range from 400 to 2,100 sq.ft and offer various functional capabilities. All greenhouses are environmentally controlled for temperature, humidity and light levels, and have automated irrigation and nutrient delivery capability using Argus Control Systems. Specialized growth areas include eight (8) air-conditioned greenhouses, two (2) black-out greenhouses for photoperiod control, and dedicated propagation rooms. Many houses have 14 to 20 ft sidewalls for growing taller crops, as well as in-floor heating, height-adjustable light canopies and automated irrigation capabilities. Over 95% of the greenhouse complex utilizes high intensity, energy-efficient horticultural LED lighting.
The Plant Growth Facility has multiple special-use work spaces including potting areas, seed processing, seed storage coolers, plant dry-down and soil handling rooms, autoclave, fertigation/utility rooms, as well as general storage space.
The Plant Growth Facility is operated by a team of 25+ staff, including dedicated horticultural, operations, and maintenance personnel. The PGF team provides plant care 365 days per year, while regularly consulting with researchers and conducting horticultural-based experimentation and growth trials. The PGF is also responsible for managing the Seed Storage coolers housing the Danforth Center Institutional Seed Collection.
This facility provides services outside its institution
This facility provides consulting outside its institution
01/18/2024
High-throughput Screening
Image Aquisition
Image Data Management
Image Processing And Analysis
Outreach
Phenotyping
Whole Plant Imaging
Phenotyping
Katie Murphy
975 N. Warson Road
St. Louis, MO 63132 - United States of America
https://www.danforthcenter.org/our-work/core-facilities/phenotyping/
RRID:SCR_019049
The DDPSC Phenotyping Core Facility provides equipment and services for high-throughput plant phenotyping. This includes both imaging and gravimetric platforms for analyzing plant genetics and environmental responses.
The Scanalyzer 3D platform consists of multiple digital imaging chambers connected to a controlled environment Conviron growth house by a conveyor belt system, resulting in a continuous imaging loop. As an automated, high-throughput platform, it enables our scientists to repeatedly image more than 1,000 plants at multiple points throughout time.
RGB imaging allows visualization and quantification of plant color and structural morphology. Near-infrared (NIR) enables visualization and quantification of plant water-use efficiency.
Watering and weighing stations are customizable to deliver water and nutrients on a specified schedule by volume or weight.
Our standard phenotyping services include operation and maintenance of the LemnaTec Scanalyzer system, as well as technical support and troubleshooting.
Other extended services may be offered based on time and labor availability, at an additional charge.
This facility provides services outside its institution
This facility provides consulting outside its institution
04/05/2023
Confocal Microscopy
Immuno Electron Microscopy
Optical Imaging
Microscopy (Electron, Fluorescence, Optical)
Kirk Czymmek
975 North Warson Road
Advanced Bioimaging Laboratory
Saint Louis, MO 63132 - United States of America
https://www.danforthcenter.org/our-work/core-facilities/advanced-bioimaging-laboratory/
RRID:SCR_018951
Test
This facility provides services outside its institution
This facility provides consulting outside its institution
08/04/2020
Cell Culture
Outreach
Tissue Culture
Transgenics
Veena Veena
975 North Warson Road
St. Louis, MO 63132 - United States of America
https://www.danforthcenter.org/scientists-research/core-technologies/tissue-culture-transformation
RRID:SCR_017783
The Plant Tissue Culture and Transformation Facility operates both as a full service facility delivering transgenics and cell cultures to researchers and a self service facility providing high quality space for researchers to use for their own specific project needs. The facility currently consists of a 880 sq. ft. single large lab along with a 225 sq ft annex for transformation and tissue culture work, over 880 sq.ft of culture growth space, and a dedicated media kitchen for media preparation.
This facility provides services outside its institution
This facility does not consult outside its institution
11/17/2010
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