The CoreMarketplace: Creative Data Solutions, Vanderbilt University

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Creative Data Solutions, Vanderbilt University (Bioinformatics)

Facility Details

About This Facility

Services and Equipment

Publications

Awards & Associations

Metadata

Other Facilities at this Institution:

Center for Innovative Technology (CIT)

NIDDK - Vanderbilt Mouse Metabolic Phenotyping Center

Vanderbilt Genome Editing Resource

Vanderbilt University

9465 MRB-IV

213 Garland Ave

Nashville, TN 37027

United States of America

https://cds.vanderbilt.edu

cite this facility

Quicklinks:

https://coremarketplace.org/cds https://coremarketplace.org/RRID:SCR_022366

Facility LIMS Page

https://cds.vanderbilt.edu/

Primary Contact:

Jean-Philippe Cartailler

Last Updated: 11/29/2022

Facility RRID

RRID:SCR_022366

Facility Details

Creative Data Solutions (CDS) is a Vanderbilt University Shared Resource that offers bioinformatics and informatics services for basic research and clinical projects.

Facility Policies

Services are offerred outside of Vanderbilt University

Consulting is offerred outside of Vanderbilt University

(To see more facility information, click the in the upper right)

Services offered:

Computational - Bioinformatics

Computational - High Performance Computing

Computational - Interactive Compute/storage

Consultation

Consultations

Data Analysis

Data Analysis And Interpretation

Data Processing

Data Processing And Interpretation

Data Visualization

Deconvolution

DNA Analysis

Gene Expression Arrays

Genomics

Genotyping-by-sequencing

High Performance Computing

Image Data Management

Image Processing And Analysis

Methylation Analysis

Multimedia Production

Proteomics

R Shiny App Development

Repository

RNA analysis

RNA Modification Analysis

RNAseq

Single-Cell Analysis

Training

Whole Exome Sequencing

Whole Genome Sequencing

Facility Equipment

No additional equipment has been listed

(To see more facility information, click the in the upper right)

Publications

Publications associated with this facility (Click To View):

1.) Osipovich AB, Zhou FY, Chong JJ, Trinh LT, Cottam MA, Shrestha S, Cartailler JP, Magnuson MA (2023 Sep 26). Deletion of Ascl1 in pancreatic β-cells improves insulin secretion, promotes parasympathetic innervation, and attenuates dedifferentiation during metabolic stress Molecular Metabolism, 78(), 101811. . PMCID: 10570713.

2.) Pettway YD, Saunders DC, Brissova M (2023 Jun 19). The human α cell in health and disease The Journal of endocrinology, 258(1), e220298. . PMCID: 10428003.

3.) Osipovich AB, Dudek KD, Trinh LT, Kim LH, Shrestha S, Cartailler JP, Magnuson MA (2023 May 8). ZFP92, a KRAB domain zinc finger protein enriched in pancreatic islets, binds to B1/Alu SINE transposable elements and regulates retroelements and genes PLOS Genetics, 19(5), e1010729. . PMCID: 10166502.

4.) Romero-Morales AI, Robertson GL, Rastogi A, Rasmussen ML, Temuri H, McElroy GS, Chakrabarty RP, Hsu L, Almonacid PM, Millis BA, Chandel NS, Cartailler JP, Gama V (2022 Oct 15). Human iPSC-derived cerebral organoids model features of Leigh syndrome and reveal abnormal corticogenesis. Development (Cambridge, England), 149(20), . . ID: 35792828.

5.) Shrestha S, Erikson G, Lyon J, Spigelman AF, Bautista A, Manning Fox JE, Dos Santos C, Shokhirev M, Cartailler JP, Hetzer MW, MacDonald PE, Arrojo E Drigo R (2022 Oct 7). Aging compromises human islet beta cell function and identity by decreasing transcription factor activity and inducing ER stress. Science advances, 8(40), eabo3932. . ID: 36197983.

6.) Guess T, Potts CR, Bhat P, Cartailler JA, Brooks A, Holt C, Yenamandra A, Wheeler FC, Savona MR, Cartailler JP, Ferrell PB (2022 Jul 6). Distinct Patterns of Clonal Evolution Drive Myelodysplastic Syndrome Progression to Secondary Acute Myeloid Leukemia. Blood cancer discovery, 3(4), 316-329. doi: 10.1158/2643-3230.BCD-21-0128. ID: 35522837.

7.) Dudek KD, Osipovich AB, Cartailler JP, Gu G, Magnuson MA (2021 Oct 19). Insm1, Neurod1, and Pax6 promote murine pancreatic endocrine cell development through overlapping yet distinct RNA transcription and splicing programs. G3 (Bethesda, Md.), 11(11), . . ID: 34534285.

8.) Shrestha S, Saunders DC, Walker JT, Camunas-Soler J, Dai XQ, Haliyur R, Aramandla R, Poffenberger G, Prasad N, Bottino R, Stein R, Cartailler JP, Parker SC, MacDonald PE, Levy SE, Powers AC, Brissova M (2021 Sep 22). Combinatorial transcription factor profiles predict mature and functional human islet α and β cells. JCI insight, 6(18), . . ID: 34428183.

9.) Osipovich AB, Dudek KD, Greenfest-Allen E, Cartailler JP, Manduchi E, Potter Case L, Choi E, Chapman AG, Clayton HW, Gu G, Stoeckert CJ Jr, Magnuson MA (2021 Mar 21). A developmental lineage-based gene co-expression network for mouse pancreatic β-cells reveals a role for Zfp800 in pancreas development. Development (Cambridge, England), 148(6), . . ID: 33653874.

10.) Malik TN, Cartailler JP, Emeson RB (2021). Quantitative Analysis of Adenosine-to-Inosine RNA Editing. Methods in molecular biology (Clifton, N.J.), 2181(), 97-111. . ID: 32729077.

11.) Saunders DC, Messmer J, Kusmartseva I, Beery ML, Yang M, Atkinson MA, Powers AC, Cartailler JP, Brissova M (2020 Nov 13). Pancreatlas: Applying an Adaptable Framework to Map the Human Pancreas in Health and Disease. Patterns (New York, N.Y.), 1(8), 100120. . ID: 33294866.

12.) Stancill JS, Osipovich AB, Cartailler JP, Magnuson MA (2019 Feb 1). Transgene-associated human growth hormone expression in pancreatic β-cells impairs identification of sex-based gene expression differences. American journal of physiology. Endocrinology and metabolism, 316(2), E196-E209. . ID: 30532991.

13.) Stancill JS, Cartailler JP, Clayton HW, O (2017 Aug). Chronic β-Cell Depolarization Impairs β-Cell Identity by Disrupting a Network of Ca(2+)-Regulated Genes. Diabetes, 66(8), 2175-2187. . ID: 28550109.

14.) McKenna NJ, Howard CL, Aufiero M, Easton-Marks J, Steffen DL, Becnel LB, Magnuson MA, McIndoe RA, Cartailler JP (2012 Oct). Research resource: dkCOIN, the National Institute of Diabetes, Digestive and Kidney Diseases (NIDDK) consortium interconnectivity network: a pilot program to aggregate research resources generated by multiple research consortia. Molecular endocrinology (Baltimore, Md.), 26(10), 1675-81. . ID: 22734043.

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Associations

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=1201
https://coremarketplace.org/RRID:SCR_022366

Institution

Institution ROR ID: https://ror.org/02vm5rt34

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

USEDit, ABRF, bioinformatics and informatics services

Resource Type:

core facility, access service resource, service resource

Citation:

Vanderbilt University Creative Data Solutions Core Facility (RRID:SCR_022366)

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Creative Data Solutions, Vanderbilt University (Bioinformatics)

Quicklinks:

Facility LIMS Page

Primary Contact:

Facility RRID

Facility Details

Facility Policies

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

Add/Edit Facility Profile

Adding a facility profile to the CoreMarketplace will automatically assign your facility an RRID (more info). You will be notified of your RRID by email once it has been assigned.

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Contact Jean-Philippe Cartailler

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Creative Data Solutions, Vanderbilt University

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