The CoreMarketplace: BRC Genomics Facility

Full Service DNA Sequencing and Genotyping facility. Offering Sanger,Fragment Analysis, Illumina, RT and Digital PCR, Single Cell, large projects, sample/library prep and QC.

Facility Policies

Services are offerred outside of Cornell University

Consulting is offerred outside of Cornell University

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Services offered:

Nucleic Acid Extraction

Real-time qPCR

RNA analysis

RNAseq

Sequencing - Capillary Sequencing

Sequencing - DNA Sequencing

Sequencing - Next Generation Sequencing (NGS)

Facility Equipment

No additional equipment has been listed

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Publications

Publications associated with this facility (Click To View):

1.) Wallace M, Fedorchak GR, Agrawal R, Gilbert RM, Patel J, Park S, Paszek M, Lammerding J (2023 Dec). The lamin A/C Ig-fold undergoes cell density-dependent changes that alter epitope binding. Nucleus (Austin, Tex.), 14(1), 2180206. . PMID: 36809122.

2.) Wang KT, Adler CE (2023 Oct 20). CRISPR/Cas9-based depletion of 16S ribosomal RNA improves library complexity of single-cell RNA-sequencing in planarians BMC Genomics, 24(), 625. . PMCID: 10588366.

3.) Shabtai IA, Wilhelm RC, Schweizer SA, Höschen C, Buckley DH, Lehmann J (2023 Oct 19). Calcium promotes persistent soil organic matter by altering microbial transformation of plant litter Nature Communications, 14(), 6609. . PMCID: 10587086.

4.) Superdock DK, Zhang W, Poole AC (2023 Oct 3). Processing and storage methods affect oral and gut microbiome composition Frontiers in Microbiology, 14(), 1253570. . PMCID: 10579807.

5.) Carmody CM, Nugen SR (2023 Sep 27). Monomeric streptavidin phage display allows efficient immobilization of bacteriophages on magnetic particles for the capture, separation, and detection of bacteria Scientific Reports, 13(), 16207. . PMCID: 10533843.

6.) Wang KT, Adler CE (2023 Jun 16). CRISPR/Cas9-based depletion of 16S ribosomal RNA improves library complexity of single-cell RNA-sequencing bioRxiv, (), 2023.05.25.542286. . PMCID: 10246003.

7.) Chaturbedi A, Lee SS (2023 Jun 14). Different gametogenesis states uniquely impact longevity in Caenorhabditis elegans bioRxiv, (), 2023.06.13.544885. . PMCID: 10312764.

8.) Walter LD, Orton JL, Hannah Fong EH, Maymi VI, Rudd BD, Elisseeff JH, Cosgrove BD (2023 May 26). Single-cell transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence bioRxiv, (), 2023.05.25.542370. . PMCID: 10245980.

9.) An L, Kim D, Donahue L, Mejooli MA, Chi-Yong E, Nishimura N, White AC (2023 May 22). Sexual dimorphism in melanocyte stem cell behavior reveals combinational therapeutic strategies for cutaneous repigmentation bioRxiv, (), 2023.05.22.541644. . PMCID: 10245926.

10.) DeBerardine M, Booth GT, Versluis PP, Lis JT (2023 May 13). The NELF pausing checkpoint mediates the functional divergence of Cdk9 Nature Communications, 14(), 2762. . PMCID: 10182999.

11.) DeBerardine M, Booth GT, Versluis PP, Lis JT (2023 May 13). The NELF pausing checkpoint mediates the functional divergence of Cdk9. Nature communications, 14(1), 2762. . PMID: 37179384.

12.) Shiroor DA, Wang KT, Sanketi BD, Tapper JK, Adler CE (2023 May 4). Inhibition of ATM kinase rescues planarian regeneration after lethal radiation. EMBO reports, 24(5), e56112. . PMID: 36943023.

13.) Highland CM, Tan A, Ricaña CL, Briggs JAG, Dick RA (2023 May 2). Structural insights into HIV-1 polyanion-dependent capsid lattice formation revealed by single particle cryo-EM. Proceedings of the National Academy of Sciences of the United States of America, 120(18), e2220545120. . PMID: 37094124.

14.) Highland CM, Tan A, Ricaña CL, Briggs JA, Dick RA (2023 Apr 24). Structural insights into HIV-1 polyanion-dependent capsid lattice formation revealed by single particle cryo-EM Proceedings of the National Academy of Sciences of the United States of America, 120(18), e2220545120. . PMCID: 10160977.

15.) Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BV, Garcia HG, Qian SB, Brunkard JO, Roeder AH (2023 Apr 7). DRMY1 promotes robust morphogenesis by sustaining translation of a hormone signaling protein bioRxiv, (), 2023.04.07.536060. . PMCID: 10104159.

16.) Kong S, Zhu M, Scarpin MR, Pan D, Jia L, Martinez RE, Alamos S, Vadde BVL, Garcia HG, Qian SB, Brunkard JO, Roeder AHK (2023 Apr 7). DRMY1 promotes robust morphogenesis by sustaining translation of a hormone signaling protein. bioRxiv : the preprint server for biology, (), . . PMID: 37066395.

17.) Zurier HS, Goddard JM (2023 Apr). A high-throughput expression and screening platform for applications-driven PETase engineering. Biotechnology and bioengineering, 120(4), 1000-1014. doi: 10.1002/bit.28319. PMID: 36575047.

18.) Shiroor DA, Wang K, Sanketi BD, Tapper JK, Adler CE (2023 Mar 21). Inhibition of ATM kinase rescues planarian regeneration after lethal radiation EMBO Reports, 24(5), e56112. . PMCID: 10157310.

19.) Wallace M, Fedorchak GR, Agrawal R, Gilbert RM, Patel J, Park S, Paszek M, Lammerding J (2023 Feb 21). The lamin A/C Ig-fold undergoes cell density-dependent changes that alter epitope binding Nucleus, 14(1), 2180206. . PMCID: 9980629.

20.) Chung SS, Bidstrup EJ, Hershewe JM, Warfel KF, Jewett MC, DeLisa MP (2022 Dec 16). Ribosome Stalling of N-Linked Glycoproteins in Cell-Free Extracts. ACS synthetic biology, 11(12), 3892-3899. . PMID: 36399685.

21.) Dunn LEM, Birkenheuer CH, Dufour R, Baines JD (2022 Nov 23). Immediate Early Proteins of Herpes Simplex Virus Transiently Repress Viral Transcription before Subsequent Activation. Journal of virology, 96(22), e0141622. . PMID: 36300939.

22.) Hufziger KA, Farquharson EL, Werner BG, Chen Q, Goddard JM, Nugen SR (2022 Nov 21). In Vivo Capsid Engineering of Bacteriophages for Oriented Surface Conjugation. ACS applied bio materials, 5(11), 5104-5112. . PMID: 36264000.

23.) Zurier HS, Goddard JM (2022 Oct 4). Directed Immobilization of PETase on Mesoporous Silica Enables Sustained Depolymerase Activity in Synthetic Wastewater Conditions. ACS applied bio materials, (), . doi: 10.1021/acsabm.2c00700. PMID: 36194455.

24.) Hovland AS, Bhattacharya D, Azambuja AP, Pramio D, Copeland J, Rothstein M, Simoes-Costa M (2022 Sep 30). Pluripotency factors are repurposed to shape the epigenomic landscape of neural crest cells Developmental cell, 57(19), 2257-2272.e5. . PMCID: 9743141.

25.) Mittal C, Lang O, Lai WK, Pugh BF (2022 Sep 1). An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters Genes & Development, 36(17), 985-1001. . PMCID: 9732905.

26.) Mittal C, Lang O, Lai WKM, Pugh BF (2022 Sep 1). An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters. Genes & development, 36(17), 985-1001. . PMID: 36302553.

27.) Pertoldi C, Ruiz-Gonzalez A, Bahrndorff S, Renee Lauridsen N, Nisbeth Henriksen T, Eskildsen A, Høye TT (2021 Sep). Strong isolation by distance among local populations of an endangered butterfly species (Euphydryas aurinia). Ecology and evolution, 11(18), 12790-12800. . PMID: 34594539.

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Associations

ABRF

Association of Biomolecular Resource Facilities

NERLSCD

Northeast Regional Life Science Core Directors

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=74
https://coremarketplace.org/RRID:SCR_021727

Institution

Institution ROR ID: https://ror.org/05bnh6r87

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

USEDit, ABRF, DNA Sequencing, Genotyping, capillary DNA analysis, single cell applications, long read capabilities

Resource Type:

core facility, access service resource, service resource

Citation:

Cornell University BRC Genomics Core Facility (RRID:SCR_021727)

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BRC Genomics Facility (Genomics / Genome Analysis and Technologies)

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Facility RRID

Facility Details

Facility Policies

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

ABRF

NERLSCD

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

Add/Edit Facility Profile

Adding a facility profile to the CoreMarketplace will automatically assign your facility an RRID (more info). You will be notified of your RRID by email once it has been assigned.

Please enter the following information:

Contact Peter Schweitzer

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BRC Genomics Facility

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