The CoreMarketplace: Genomic Sequencing and Analysis Facility

All Facilities >> The University of Texas at Austin >> Genomic Sequencing and Analysis Facility (Genomics / Genome Analysis and Technologies)

Genomic Sequencing and Analysis Facility (Genomics / Genome Analysis and Technologies)

Facility Details

About This Facility

Services and Equipment

Publications

Awards & Associations

Metadata

Other Facilities at this Institution:

Biomedical Imaging Center

CBRS-Bioinformatics Consulting Group

Microscopy and Imaging Facility

Mouse Genetic Engineering Facility

UT Austin Advanced Protein Therapeutics Core

UTA CBRS Biological Mass Spectrometry Facility

UTA CBRS Sauer Structural Biology Laboratory

UTA-Biomedical Research Computing Facility

The University of Texas at Austin

2500 Speedway

MBB 3.210

Austin, TX 78712

United States of America

https://wikis.utexas.edu/display/GSAF/Home+Page

cite this facility

Primary Contact:

Jessica Podnar

Last Updated: 09/16/2021

Facility RRID

RRID:SCR_021713

Facility Details

The GSAF is a full service genomics core, we offer consultations, library prep, Sanger and Next Generation Sequencing.

Facility Policies

Services are offerred outside of The University of Texas at Austin

Consulting is offerred outside of The University of Texas at Austin

(To see more facility information, click the in the upper right)

Services offered:

10x Genomics

RNA Integrity

Sequencing - DNA Sequencing

Sequencing - Next Generation Sequencing (NGS)

Facility Equipment

No additional equipment has been listed

(To see more facility information, click the in the upper right)

Publications

Publications associated with this facility (Click To View):

1.) Roberson EC, Tran NK, Godambe AN, Mark H, Nguimtsop M, Rust T, Ung E, Barker LJ, Fitch RD, Wallingford JB (2023 Sep 20). Hedgehog signaling is required for endometrial remodeling and myometrial homeostasis in the cycling mouse uterus iScience, 26(10), 107993. . PMCID: 10551904.

2.) Deshpande RA, Marin-Gonzalez A, Barnes HK, Woolley PR, Ha T, Paull TT (2023 Sep 16). Genome-wide analysis of DNA-PK-bound MRN cleavage products supports a sequential model of DSB repair pathway choice Nature Communications, 14(), 5759. . PMCID: 10505227.

3.) Ramachandran J, Chen W, Lex RK, Windsor KE, Lee H, Wang T, Zhou W, Ji H, Vokes SA (2023 Jul 17). The BAF chromatin complex component SMARCC1 does not mediate GLI transcriptional repression of Hedgehog target genes in limb buds. bioRxiv : the preprint server for biology, (), . . PMID: 36798239.

4.) Wright ML, Podnar J, Longoria KD, Nguyen TC, Lim S, Garcia S, Wylie D (2023 May 4). Comparison of commercial DNA extraction kits for whole metagenome sequencing of human oral, vaginal, and rectal microbiome samples. bioRxiv : the preprint server for biology, (), . . PMID: 36778319.

5.) Coleman SM, Cordova LT, Lad BC, Ali SA, Ramanan E, Collett JR, Alper HS (2023 Mar). Evolving tolerance of Yarrowia lipolytica to hydrothermal liquefaction aqueous phase waste. Applied microbiology and biotechnology, 107(5), 2011-2025. doi: 10.1007/s00253-023-12393-8. PMID: 36719433.

6.) Yuan SF, Nair PH, Borbon D, Coleman SM, Fan PH, Lin WL, Alper HS (2022 Nov). Metabolic engineering of E. coli for β-alanine production using a multi-biosensor enabled approach. Metabolic engineering, 74(), 24-35. doi: 10.1016/j.ymben.2022.08.012. PMID: 36067877.

7.) Presnell KV, Melhem O, Morse NJ, Alper HS (2022 Oct 21). Modular, Synthetic Boolean Logic Gates Enabled in Saccharomyces cerevisiae through T7 Polymerases/CRISPR dCas9 Designs. ACS synthetic biology, 11(10), 3414-3425. doi: 10.1021/acssynbio.2c00327. PMID: 36206523.

8.) Hillsley A, Santoso MS, Engels SM, Halwachs KN, Contreras LM, Rosales AM (2022 Jul 18). A strategy to quantify myofibroblast activation on a continuous spectrum. Scientific reports, 12(1), 12239. . PMID: 35851602.

9.) Lu H, Diaz DJ, Czarnecki NJ, Zhu C, Kim W, Shroff R, Acosta DJ, Alexander BR, Cole HO, Zhang Y, Lynd NA, Ellington AD, Alper HS (2022 Apr). Machine learning-aided engineering of hydrolases for PET depolymerization. Nature, 604(7907), 662-667. doi: 10.1038/s41586-022-04599-z. PMID: 35478237.

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Associations

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=1209
https://coremarketplace.org/RRID:SCR_021713

Institution

Institution ROR ID: https://ror.org/00hj54h04

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

USEDit, ABRF, sequencing core, Sanger Sequencing service, Next Generation Sequencing service, library preparation, quality check service

Resource Type:

core facility, access service resource, service resource

Citation:

University of Texas at Austin Genomic Sequencing and Analysis Core Facility (RRID:SCR_021713)

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Genomic Sequencing and Analysis Facility (Genomics / Genome Analysis and Technologies)

Primary Contact:

Facility RRID

Facility Details

Facility Policies

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

Add/Edit Facility Profile

Adding a facility profile to the CoreMarketplace will automatically assign your facility an RRID (more info). You will be notified of your RRID by email once it has been assigned.

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Contact Jessica Podnar

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Genomic Sequencing and Analysis Facility

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