1.) Kennedy DR, Lemiere J, Tan C, Simental E, Braxton J, Maxwell RA, Amine AA, Al-Sady B (2024 Oct 30). Phosphorylation of HP1/Swi6 relieves competition with Suv39/Clr4 on nucleosomes and enables H3K9 trimethyl spreading bioRxiv, (), 2024.10.25.620326. . PMCID: 11565791.
2.) Winkler J, Tan W, Diadhiou CM, McGinnis CS, Abbasi A, Hasnain S, Durney S, Atamaniuc E, Superville D, Awni L, Lee JV, Hinrichs JH, Wagner PS, Singh N, Hein MY, Borja M, Detweiler AM, Liu SY, Nanjaraj A, Sitarama V, Rugo HS, Neff N, Gartner ZJ, Oliveira Pisco A, Goga A, Darmanis S, Werb Z (2024 Sep 3). Single-cell analysis of breast cancer metastasis reveals epithelial-mesenchymal plasticity signatures associated with poor outcomes The Journal of Clinical Investigation, 134(17), e164227. . PMCID: 11364385.
3.) Leng K, Rooney B, McCarthy F, Xia W, Rose IV, Bax S, Chin M, Fathi S, Herrington KA, Leonetti M, Kao A, Fancy SP, Elias JE, Kampmann M (2024 Aug 8). mTOR activation induces endolysosomal remodeling and nonclassical secretion of IL-32 via exosomes in inflammatory reactive astrocytes Journal of Neuroinflammation, 21(), 198. . PMCID: 11312292.
4.) Wilkins KC, Schroeder T, Gu S, Revalde JL, Floor SN (2024 Aug). A novel reporter for helicase activity in translation uncovers DDX3X interactions RNA, 30(8), 1041-1057. . PMCID: 11251518.
5.) Ahanger SH, Zhang C, Semenza ER, Gil E, Cole MA, Wang L, Kriegstein AR, Lim DA (2024 Aug 1). Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis bioRxiv, (), 2024.08.01.606248. . PMCID: 11312588.
6.) Kuhn NF, Zaleta-Linares I, Nyberg WA, Eyquem J, Krummel MF (2024 Jul 16). Localized in vivo gene editing of murine cancer-associated fibroblasts bioRxiv, (), 2024.07.11.603114. . PMCID: 11275728.
7.) Sytsma BJ, Allain V, Bourke S, Faizee F, Fathi M, Berdeaux R, Ferreira LM, Brewer WJ, Li L, Pan FL, Rothrock AG, Nyberg WA, Li Z, Wilson LH, Eyquem J, Pawell RS (2024 Jul 13). Scalable intracellular delivery via microfluidic vortex shedding enhances the function of chimeric antigen receptor T-cells bioRxiv, (), 2024.06.25.600671. . PMCID: 11230359.
8.) Quandt Z, Jacob S, Fadlullah MZ, Wu C, Wu C, Huppert L, Levine LS, Sison P, Tsai KK, Chow M, Kang JH, Hwang J, Lee JC, Oglesby A, Venegas J, Brintz BJ, Tan AC, Anderson MS, Rosenblum MD, Young A, Daud AI (2024 Jun 24). Phase II trial of pembrolizumab, ipilimumab, and aspirin in melanoma: clinical outcomes and translational predictors of response BJC Reports, 2(), 46. . PMCID: 11524064.
9.) Luck C, Jacobs KA, Okimoto RA (2024 Jun 9). The Capicua C1 Domain is Required for Full Activity of the CIC::DUX4 Fusion Oncoprotein bioRxiv, (), 2024.06.06.597815. . PMCID: 11185703.
10.) Luck C, Jacobs KA, Okimoto RA (2024 Jun 9). The Capicua C1 Domain is Required for Full Activity of the CIC::DUX4 Fusion Oncoprotein. bioRxiv : the preprint server for biology, (), . . PMID: 38895482.
11.) Mowery CT, Freimer JW, Chen Z, Casaní-Galdón S, Umhoefer JM, Arce MM, Gjoni K, Daniel B, Sandor K, Gowen BG, Nguyen V, Simeonov DR, Garrido CM, Curie GL, Schmidt R, Steinhart Z, Satpathy AT, Pollard KS, Corn JE, Bernstein BE, Ye CJ, Marson A (2024 May 29). Systematic decoding of cis gene regulation defines context-dependent control of the multi-gene costimulatory receptor locus in human T cells Nature Genetics, 56(6), 1156-1167. . PMCID: 11176074.
12.) Alexander M, Upadhyay V, Rock R, Ramirez L, Trepka K, Puchalska P, Orellana D, Ang QY, Whitty C, Turnbaugh JA, Tian Y, Dumlao D, Nayak R, Patterson A, Newman JC, Crawford PA, Turnbaugh PJ (2024 May 13). A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity. bioRxiv : the preprint server for biology, (), . . PMID: 37961209.
13.) Berjis A, Muthumani D, Aguilar OA, Pomp O, Johnson O, Finck AV, Engel NW, Chen L, Plachta N, Scholler J, Lanier LL, June CH, Sheppard NC (2024 May 10). Pretreatment with IL-15 and IL-18 rescues natural killer cells from granzyme B-mediated apoptosis after cryopreservation Nature Communications, 15(), 3937. . PMCID: 11087472.
14.) Berleant JD, Banal JL, Rao DK, Bathe M (2024 Apr 15). Scalable search of massively pooled nucleic acid samples enabled by a molecular database query language medRxiv, (), 2024.04.12.24305660. . PMCID: 11064994.
15.) Ledergor G, Fan Z, Wu K, McCarthy E, Hyrenius-Wittsten A, Starzinski A, Chang H, Bridge M, Kwek S, Cheung A, Bylsma S, Hansen E, Wolf J, Wong S, Shah N, Roybal KT, Martin T, Ye CJ, Fong L (2024 Apr 6). CD4+ CAR T-cell exhaustion associated with early relapse of multiple myeloma after BCMA CAR T-cell therapy Blood Advances, 8(13), 3562-3575. . PMCID: 11319832.
16.) Sommer C, Cohen JN, Dehmel S, Neuhaus V, Schaudien D, Braun A, Sewald K, Rosenblum MD (2024 Apr). Interleukin-2-induced skin inflammation. European journal of immunology, 54(4), e2350580. . PMID: 38430129.
17.) Cleary SJ, Seo Y, Tian JJ, Kwaan N, Bulkley DP, Bentlage AE, Vidarsson G, Boilard É, Spirig R, Zimring JC, Looney MR (2024 Mar 26). IgG hexamers initiate complement-dependent acute lung injury The Journal of Clinical Investigation, 134(11), e178351. . PMCID: 11142733.
18.) Podolsky MJ, Kheyfets B, Pandey M, Beigh AH, Yang CD, Lizama CO, Datta R, Lin LL, Wang Z, Wolters PJ, McManus MT, Qi L, Atabai K (2024 Feb 20). Genome-wide screens identify SEL1L as an intracellular rheostat controlling collagen turnover Nature Communications, 15(), 1531. . PMCID: 10879544.
19.) Mennillo E, Kim YJ, Lee G, Rusu I, Patel RK, Dorman LC, Flynn E, Li S, Bain JL, Andersen C, Rao A, Tamaki S, Tsui J, Shen A, Lotstein ML, Rahim M, Naser M, Bernard-Vazquez F, Eckalbar W, Cho SJ, Beck K, El-Nachef N, Lewin S, Selvig DR, Terdiman JP, Mahadevan U, Oh DY, Fragiadakis GK, Pisco A, Combes AJ, Kattah MG (2024 Feb 19). Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis Nature Communications, 15(), 1493. . PMCID: 10876948.
20.) Chang CR, Vykunta VS, Goodman DB, Muldoon JJ, Nyberg WA, Liu C, Allain V, Rothrock A, Wang CH, Marson A, Shy BR, Eyquem J (2024 Feb 7). Ultra-high efficiency T cell reprogramming at multiple loci with SEED-Selection. bioRxiv : the preprint server for biology, (), . . PMID: 38370809.
21.) Castillo JG, DeBarge R, Mende A, Tenvooren I, Marquez DM, Straub A, Busch DH, Spitzer MH, DuPage M (2024 Jan 12). A mass cytometry approach to track the evolution of T cell responses during infection and immunotherapy by paired T cell receptor repertoire and T cell differentiation state analysis bioRxiv, (), 2024.01.11.575237. . PMCID: 10802618.
22.) Cohen JN, Gouirand V, Macon CE, Lowe MM, Boothby IC, Moreau JM, Gratz IK, Stoecklinger A, Weaver CT, Sharpe AH, Ricardo-Gonzalez RR, Rosenblum MD (2024 Jan 5). Regulatory T cells in skin mediate immune privilege of the hair follicle stem cell niche Science immunology, 9(91), eadh0152. . PMCID: 11003870.
23.) Arias-Badia M, Pai CS, Chen P, Chang A, Lwin YM, Srinath A, Gotts JE, Glantz SA, Fong L (2024). E-cigarette exposure disrupts antitumor immunity and promotes metastasis. Frontiers in immunology, 15(), 1444020. . PMID: 39221247.
24.) Wiencke JK, Nissen E, Koestler DC, Tamaki SJ, Tamaki CM, Hansen HM, Warrier G, Hadad S, McCoy L, Rice T, Clarke J, Taylor JW, Salas LA, Christensen BC, Kelsey KT, Butler R, Molinaro AM (2023 Dec 28). Enrichment of a neutrophil-like monocyte transcriptional state in glioblastoma myeloid suppressor cells Research Square, (), rs.3.rs-3793353. . PMCID: 10793488.
25.) Wheeler BD, Gagnon JD, Zhu WS, Muñoz-Sandoval P, Wong SK, Simeonov DS, Li Z, DeBarge R, Spitzer MH, Marson A, Ansel KM (2023 Dec 21). The lncRNA Malat1 inhibits miR-15/16 to enhance cytotoxic T cell activation and memory cell formation eLife, 12(), RP87900. . PMCID: 10735224.
26.) Wang X, Gaur M, Mounzih K, Rodriguez HJ, Qiu H, Chen M, Yan L, Cooper BA, Narayan S, Derakhshandeh R, Rao P, Han DD, Nabavizadeh P, Springer ML, John CM (2023 Nov 25). Inhibition of galectin-3 post-infarction impedes progressive fibrosis by regulating inflammatory profibrotic cascades. Cardiovascular research, 119(15), 2536-2549. . PMID: 37602717.
27.) Locher V, Park S, Bunis DG, Makredes S, Mayer M, Burt TD, Fragiadakis GK, Halkias J (2023 Nov 22). Homeostatic cytokines reciprocally modulate the emergence of prenatal effector PLZF+CD4+ T cells in humans. JCI insight, 8(22), . . PMID: 37856221.
28.) Adamik J, Munson PV, Maurer DM, Hartmann FJ, Bendall SC, Argüello RJ, Butterfield LH (2023 Nov 8). Immuno-metabolic dendritic cell vaccine signatures associate with overall survival in vaccinated melanoma patients Nature Communications, 14(), 7211. . PMCID: 10632482.
29.) Hadley P, Chen Y, Cline L, Han Z, Tang Q, Huang X, Desai T (2023 Nov). Precise surface functionalization of PLGA particles for human T cell modulation. Nature protocols, 18(11), 3289-3321. . PMID: 37853157.
30.) Sin JH, Sucharov J, Kashyap S, Wang Y, Proekt I, Liu X, Parent AV, Gupta A, Kastner P, Chan S, Gardner JM, Ntranos V, Miller CN, Anderson MS, Schjerven H, Waterfield MR (2023 Oct 27). Ikaros is a principal regulator of Aire(+) mTEC homeostasis, thymic mimetic cell diversity, and central tolerance. Science immunology, 8(88), eabq3109. doi: 10.1126/sciimmunol.abq3109. PMID: 37889983.
31.) Joehnk B, Ali N, Voorhies M, Walcott K, Sil A (2023 Oct 11). Recyclable CRISPR/Cas9-mediated gene disruption and deletions in Histoplasma mSphere, 8(6), e00370-23. . PMCID: 10732100.
32.) Dhariwala MO, DeRogatis AM, Okoro JN, Weckel A, Tran VM, Habrylo I, Ojewumi OT, Tammen AE, Leech JM, Merana GR, Carale RO, Barrere-Cain R, Hiam-Galvez KJ, Spitzer MH, Scharschmidt TC (2023 Oct 2). Commensal myeloid crosstalk in neonatal skin regulates long-term cutaneous type 17 inflammation bioRxiv, (), 2023.09.29.560039. . PMCID: 10592812.
33.) Stevenson ME, Bieri G, Kaletsky R, St. Ange J, Remesal L, Pratt KJ, Zhou S, Weng Y, Murphy CT, Villeda SA (2023 Sep 19). Neuronal activation of Gαq EGL-30/GNAQ late in life rejuvenates cognition across species Cell reports, 42(9), 113151. . PMCID: 10627507.
34.) Wilkins KC, Schroeder T, Gu S, Revalde JL, Floor SN (2023 Sep 14). Determinants of DDX3X sensitivity uncovered using a helicase activity in translation reporter bioRxiv, (), 2023.09.14.557805. . PMCID: 10515938.
35.) Blaeschke F, Chen YY, Apathy R, Daniel B, Chen AY, Chen PA, Sandor K, Zhang W, Li Z, Mowery CT, Yamamoto TN, Nyberg WA, To A, Yu R, Bueno R, Kim MC, Schmidt R, Goodman DB, Feuchtinger T, Eyquem J, Jimmie Ye C, Carnevale J, Satpathy AT, Shifrut E, Roth TL, Marson A (2023 Sep 14). Modular pooled discovery of synthetic knockin sequences to program durable cell therapies. Cell, 186(19), 4216-4234.e33. . PMID: 37714135.
36.) Schroer AB, Ventura PB, Sucharov J, Misra R, Chui MK, Bieri G, Horowitz AM, Smith LK, Encabo K, Tenggara I, Couthouis J, Gross JD, Chan JM, Luke A, Villeda SA (2023 Aug 16). Platelet factors attenuate inflammation and rescue cognition in ageing Nature, 620(7976), 1071-1079. . PMCID: 10468395.
37.) Wheeler BD, Gagnon JD, Zhu WS, Muñoz-Sandoval P, Wong SK, Simeonov DR, Li Z, Debarge R, Spitzer MH, Marson A, Ansel KM (2023 Jul 29). The lncRNA Malat1 Inhibits miR-15/16 to Enhance Cytotoxic T Cell Activation and Memory Cell Formation bioRxiv, (), 2023.04.14.536843. . PMCID: 10401941.
38.) Ayad NM, Lakins JN, Ghagre A, Ehrlicher AJ, Weaver VM (2023 Jul 15). Tissue tension permits β-catenin phosphorylation to drive mesoderm specification in human embryonic stem cells bioRxiv, (), 2023.07.14.549074. . PMCID: 10370032.
39.) Mennillo E, Kim YJ, Rusu I, Lee G, Dorman LC, Bernard-Vazquez F, Bain JL, Patel R, Andersen C, Rao A, Tamaki S, Tsui J, Shen A, Naser M, Eckalbar W, Cho SJ, Beck K, El-Nachef N, Lewin S, Selvig DR, Terdiman JP, Mahadevan U, Oh D, Fragiadakis GK, Pisco A, Combes A, Kattah MG (2023 Jul 15). Single-cell and spatial multi-omics identify innate and stromal modules targeted by anti-integrin therapy in ulcerative colitis. bioRxiv : the preprint server for biology, (), . . PMID: 36711576.
40.) Joehnk B, Ali N, Voorhies M, Walcott K, Sil A (2023 Jul 5). Recyclable CRISPR/Cas9 mediated gene disruption and deletions in Histoplasma bioRxiv, (), 2023.07.05.547774. . PMCID: 10350005.
41.) Liu Y, Reyes E, Castillo-Azofeifa D, Klein OD, Nystul T, Barber DL (2023 Jun 23). Intracellular pH dynamics regulates intestinal stem cell lineage specification. Nature communications, 14(1), 3745. . PMID: 37353491.
42.) Tanaka M, Lum L, Hu K, Ledezma-Soto C, Samad B, Superville D, Ng K, Adams Z, Kersten K, Fong L, Combes AJ, Krummel M, Reeves M (2023 Jun 21). Tumor cell heterogeneity drives spatial organization of the intratumoral immune response in squamous cell skin carcinoma bioRxiv, (), 2023.04.25.538140. . PMCID: 10168251.
43.) Weckel A, Dhariwala MO, Ly K, Tran VM, Ojewumi OT, Riggs JB, Gonzalez JR, Dwyer LR, Okoro JN, Leech JM, Bacino MS, Cho GD, Merana G, Anandasabapathy N, Kumamoto Y, Scharschmidt TC (2023 Jun 13). Long-term tolerance to skin commensals is established neonatally through a specialized dendritic cell subgroup. Immunity, 56(6), 1239-1254.e7. . PMID: 37028427.
44.) Hu KH, Kuhn NF, Courau T, Tsui J, Samad B, Ha P, Kratz JR, Combes AJ, Krummel MF (2023 Jun 1). Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer. Cell stem cell, 30(6), 885-903.e10. . PMID: 37267918.
45.) Kersten K, You R, Liang S, Tharp KM, Pollack J, Weaver VM, Krummel MF, Headley MB (2023 May 31). Uptake of tumor-derived microparticles induces metabolic reprogramming of macrophages in the early metastatic lung Cell reports, 42(6), 112582. . PMCID: 10592447.
46.) Jowhar Z, Xu A, Venkataramanan S, Hoye ML, Silver DL, Floor SN, Calviello L (2023 May 12). A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X bioRxiv, (), 2023.05.11.540322. . PMCID: 10197686.
47.) Sbierski-Kind J, Cautivo KM, Wagner JC, Dahlgren MW, Nilsson J, Krasilnikov M, Mroz NM, Lizama CO, Gan AL, Matatia PR, Taruselli MT, Chang AA, Caryotakis S, O'Leary CE, Kotas M, Mattis AN, Peng T, Locksley RM, Molofsky AB (2023 Apr 28). Group 2 innate lymphoid cells constrain type 3/17 lymphocytes in shared stromal niches to restrict liver fibrosis. bioRxiv : the preprint server for biology, (), . . PMID: 37163060.
48.) Foss DV, Muldoon JJ, Nguyen DN, Carr D, Sahu SU, Hunsinger JM, Wyman SK, Krishnappa N, Mendonsa R, Schanzer EV, Shy BR, Vykunta VS, Allain V, Li Z, Marson A, Eyquem J, Wilson RC (2023 Apr 25). Peptide-mediated delivery of CRISPR enzymes for the efficient editing of primary human lymphocytes Nature Biomedical Engineering, 7(5), 647-660. . PMCID: 10129304.
49.) Im KW, Huppert LA, Malevanchik L, Rugo HS, Combes AJ, Campbell MJ, Krummel MF, Melisko ME (2023 Apr 7). High-dimensional immune cell profiling of cerebrospinal fluid from patients with metastatic breast cancer and leptomeningeal disease NPJ Breast Cancer, 9(), 22. . PMCID: 10082042.
50.) Weckel A, Dhariwala MO, Ly K, Tran VM, Ojewumi OT, Riggs JB, Gonzalez JR, Dwyer LR, Okoro JN, Leech JM, Bacino MS, Cho GD, Merana G, Anandasabapathy N, Kumamoto Y, Scharschmidt TC (2023 Apr 6). Long term tolerance to skin commensals is established neonatally through a specialized dendritic cell subgroup Immunity, 56(6), 1239-1254.e7. . PMCID: 10330031.
51.) Kühn MJ, Macmillan H, Talà L, Inclan Y, Patino R, Pierrat X, Al-Mayyah Z, Engel JN, Persat A (2023 Apr 3). Two antagonistic response regulators control Pseudomonas aeruginosa polarization during mechanotaxis. The EMBO journal, 42(7), e112165. . PMID: 36795017.
52.) Wald T, Verma A, Cooley V, Marangoni P, Cazares O, Sharir A, Sandoval EJ, Sung D, Najibi H, Drennon TY, Bush JO, Joester D, Klein OD (2023 Apr 2). A Suite of Mouse Reagents for Studying Amelogenesis. bioRxiv : the preprint server for biology, (), . . PMID: 37034814.
53.) Johansson K, Gagnon JD, Zhou S, Fassett MS, Schroeder AW, Kageyama R, Bautista RA, Pham H, Woodruff PG, Ansel KM (2023 Mar 26). An essential role for miR-15/16 in Treg suppression and restriction of proliferation. bioRxiv : the preprint server for biology, (), . . PMID: 36993421.
54.) Barron JJ, Mroz NM, Taloma SE, Dahlgren MW, Ortiz-Carpena J, Dorman LC, Vainchtein ID, Escoubas CC, Molofsky AB, Molofsky AV (2023 Mar 17). Group 2 innate lymphoid cells promote inhibitory synapse development and social behavior bioRxiv, (), 2023.03.16.532850. . PMCID: 10055027.
55.) Aguilar OA, Gonzalez-Hinojosa MD, Arakawa-Hoyt JS, Millan AJ, Gotthardt D, Nabekura T, Lanier LL (2023 Jan 10). The CD16 and CD32b Fc-gamma receptors regulate antibody-mediated responses in mouse natural killer cells Journal of leukocyte biology, 113(1), 27-40. . PMCID: 10197019.
56.) Eliazer S, Sun X, Barruet E, Brack AS (2022 Dec 30). Heterogeneous levels of delta-like 4 within a multinucleated niche cell maintains muscle stem cell diversity eLife, 11(), e68180. . PMCID: 9803355.
57.) Allen GM, Frankel NW, Reddy NR, Bhargava HK, Yoshida MA, Stark SR, Purl M, Lee J, Yee JL, Yu W, Li AW, Garcia KC, El-Samad H, Roybal KT, Spitzer MH, Lim WA (2022 Dec 16). Synthetic cytokine circuits that drive T cell infiltration into immune-excluded tumors Science (New York, N.Y.), 378(6625), eaba1624. . PMCID: 9970000.
58.) Allen GM, Frankel NW, Reddy NR, Bhargava HK, Yoshida MA, Stark SR, Purl M, Lee J, Yee JL, Yu W, Li AW, Garcia KC, El-Samad H, Roybal KT, Spitzer MH, Lim WA (2022 Dec 16). Synthetic cytokine circuits that drive T cells into immune-excluded tumors. Science (New York, N.Y.), 378(6625), eaba1624. . PMID: 36520915.
59.) Beppler C, Eichorst J, Marchuk K, Cai E, Castellanos CA, Sriram V, Roybal KT, Krummel MF (2022 Dec 15). Hyperstabilization of T cell microvilli contacts by chimeric antigen receptors The Journal of Cell Biology, 222(3), e202205118. . PMCID: 9757849.
60.) Tolani B, Celli A, Yao Y, Tan YZ, Fetter R, Liem CR, de Smith AJ, Vasanthakumar T, Bisignano P, Cotton AD, Seiple IB, Rubinstein JL, Jost M, Weissman JS (2022 Dec). Ras-mutant cancers are sensitive to small molecule inhibition of V-type ATPases in mice. Nature biotechnology, 40(12), 1834-1844. . PMID: 35879364.
61.) Pratt KJB, Shea JM, Remesal-Gomez L, Bieri G, Smith LK, Couthouis J, Chen CP, Roy IJ, Gontier G, Villeda SA (2022 Nov 8). Loss of neuronal Tet2 enhances hippocampal-dependent cognitive function. Cell reports, 41(6), 111612. . PMID: 36351399.
62.) Shemesh A, Su Y, Calabrese DR, Chen D, Arakawa-Hoyt J, Roybal KT, Heath JR, Greenland JR, Lanier LL (2022 Nov 7). Diminished cell proliferation promotes natural killer cell adaptive-like phenotype by limiting FcεRIγ expression. The Journal of experimental medicine, 219(11), . . PMID: 36066491.
63.) Mohammadi L, Han DD, Xu F, Huang A, Derakhshandeh R, Rao P, Whitlatch A, Cheng J, Keith RJ, Hamburg NM, Ganz P, Hellman J, Schick SF, Springer ML (2022 Nov). Chronic E-Cigarette Use Impairs Endothelial Function on the Physiological and Cellular Levels. Arteriosclerosis, thrombosis, and vascular biology, 42(11), 1333-1350. . PMID: 36288290.
64.) Kogut S, Paculova H, Rodriguez P, Boyd J, Richman A, Palaria A, Schjerven H, Frietze S (2022 Oct 19). Ikaros Regulates microRNA Networks in Acute Lymphoblastic Leukemia Epigenomes, 6(4), 37. . PMCID: 9624360.
65.) Cohen A, Jeng EE, Voorhies M, Symington J, Ali N, Rodriguez RA, Bassik MC, Sil A (2022 Sep 29). Genome-scale CRISPR screening reveals that C3aR signaling is critical for rapid capture of fungi by macrophages PLoS Pathogens, 18(9), e1010237. . PMCID: 9578593.
66.) Wiencke JK, Molinaro AM, Warrier G, Rice T, Clarke J, Taylor JW, Wrensch M, Hansen H, McCoy L, Tang E, Tamaki SJ, Tamaki CM, Nissen E, Bracci P, Salas LA, Koestler DC, Christensen BC, Zhang Z, Kelsey KT (2022 Sep 20). DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival Nature Communications, 13(), 5505. . PMCID: 9486797.
67.) Wu D, Poddar A, Ninou E, Hwang E, Cole MA, Liu SJ, Horlbeck MA, Chen J, Replogle JM, Carosso GA, Eng NW, Chang J, Shen Y, Weissman JS, Lim DA (2022 Sep 14). Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells Cell genomics, 2(11), 100177. . PMCID: 9648144.
68.) Adamik J, Munson PV, Hartmann FJ, Combes AJ, Pierre P, Krummel MF, Bendall SC, Argüello RJ, Butterfield LH (2022 Sep 2). Distinct metabolic states guide maturation of inflammatory and tolerogenic dendritic cells Nature Communications, 13(), 5184. . PMCID: 9440236.
69.) McCauley KE, Rackaityte E, LaMere B, Fadrosh DW, Fujimura KE, Panzer AR, Lin DL, Lynch KV, Halkias J, Mendoza VF, Burt TD, Bendixsen C, Barnes K, Kim H, Jones K, Ownby DR, Johnson CC, Seroogy CM, Gern JE, Boushey HA, Lynch SV (2022 Aug 16). Heritable vaginal bacteria influence immune tolerance and relate to early-life markers of allergic sensitization in infancy. Cell reports. Medicine, 3(8), 100713. . PMID: 35932762.
70.) Shemesh A, Pickering H, Roybal KT, Lanier LL (2022 Aug 1). Differential IL-12 signaling induces human natural killer cell activating receptor-mediated ligand-specific expansion. The Journal of experimental medicine, 219(8), . . PMID: 35758909.
71.) Freimer JW, Shaked O, Naqvi S, Sinnott-Armstrong N, Kathiria A, Garrido CM, Chen AF, Cortez JT, Greenleaf WJ, Pritchard JK, Marson A (2022 Jul 11). Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks Nature genetics, 54(8), 1133-1144. . PMCID: 10035359.
72.) Ma T, McGregor M, Giron L, Xie G, George AF, Abdel-Mohsen M, Roan NR (2022 Jul 5). Single-cell glycomics analysis by CyTOF-Lec reveals glycan features defining cells differentially susceptible to HIV eLife, 11(), e78870. . PMCID: 9255966.
73.) Lee JV, Housley F, Yau C, Nakagawa R, Winkler J, Anttila JM, Munne PM, Savelius M, Houlahan KE, Van de Mark D, Hemmati G, Hernandez GA, Zhang Y, Samson S, Baas C, Esserman LJ, van ‘t Veer LJ, Rugo HS, Curtis C, Klefström J, Matloubian M, Goga A (2022 Jun 27). Combinatorial immunotherapies overcome MYC-driven immune evasion in triple negative breast cancer Nature Communications, 13(), 3671. . PMCID: 9237085.
74.) Kersten K, Hu KH, Combes AJ, Samad B, Harwin T, Ray A, Rao AA, Cai E, Marchuk K, Artichoker J, Courau T, Shi Q, Belk J, Satpathy AT, Krummel MF (2022 Jun 13). Spatiotemporal co-dependency between macrophages and exhausted CD8(+) T cells in cancer. Cancer cell, 40(6), 624-638.e9. . PMID: 35623342.
75.) You R, Artichoker J, Ray A, Gonzalez Velozo H, Rock DA, Conner KP, Krummel MF (2022 Jun 3). Visualizing Spatial and Stoichiometric Barriers to Bispecific T-cell Engager Efficacy Cancer immunology research, 10(6), 698-712. . PMCID: 9177795.
76.) You R, Artichoker J, Ray A, Gonzalez Velozo H, Rock DA, Conner KP, Krummel MF (2022 Jun 3). Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy. Cancer immunology research, 10(6), 698-712. . PMID: 35413104.
77.) Merana GR, Dwyer LR, Dhariwala MO, Weckel A, Gonzalez JR, Okoro JN, Cohen JN, Tamaki CM, Han J, Tasoff P, Palacios-Calderon Y, Ha CWY, Lynch SV, Segre JA, Kong HH, Kattah MG, Ma A, Scharschmidt TC (2022 May 31). Intestinal inflammation alters the antigen-specific immune response to a skin commensal. Cell reports, 39(9), 110891. . PMID: 35649365.
78.) Kersten K, Hu KH, Combes AJ, Samad B, Harwin T, Ray A, Rao AA, Cai E, Marchuk K, Artichoker J, Courau T, Shi Q, Belk J, Satpathy AT, Krummel MF (2022 May 26). Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer Cancer cell, 40(6), 624-638.e9. . PMCID: 9197962.
79.) Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JL, Nord AS (2022 Apr 4). Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia Proceedings of the National Academy of Sciences of the United States of America, 119(15), e2108760119. . PMCID: 9169651.
80.) Stormo AED, Shavarebi F, FitzGibbon M, Earley EM, Ahrendt H, Lum LS, Verschueren E, Swaney DL, Skibinski G, Ravisankar A, van Haren J, Davis EJ, Johnson JR, Von Dollen J, Balen C, Porath J, Crosio C, Mirescu C, Iaccarino C, Dauer WT, Nichols RJ, Wittmann T, Cox TC, Finkbeiner S, Krogan NJ, Oakes SA, Hiniker A (2022 Apr 4). The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity. The Journal of cell biology, 221(4), . . PMID: 35266954.
81.) Xie G, Moron-Lopez S, Siegel DA, Yin K, Polos A, Cohen J, Greenblatt RM, Tien PC, Lee SA, Yukl SA, Roan NR (2022 Apr 1). Common and Divergent Features of T Cells from Blood, Gut, and Genital Tract of Antiretroviral Therapy-Treated HIV+ Women. Journal of immunology (Baltimore, Md. : 1950), 208(7), 1790-1801. . PMID: 35296537.
82.) Potempa M, Aguilar OA, Gonzalez-Hinojosa MDR, Tenvooren I, Marquez DM, Spitzer MH, Lanier LL (2022 Apr 1). Influence of Self-MHC Class I Recognition on the Dynamics of NK Cell Responses to Cytomegalovirus Infection. Journal of immunology (Baltimore, Md. : 1950), 208(7), 1742-1754. . PMID: 35321880.
83.) Aguilar OA, Fong LK, Ishiyama K, DeGrado WF, Lanier LL (2022 Mar 23). The CD3ζ adaptor structure determines functional differences between human and mouse CD16 Fc receptor signaling The Journal of Experimental Medicine, 219(5), e20220022. . PMCID: 8953085.
84.) Potempa M, Aguilar OA, Gonzalez-Hinojosa MD, Tenvooren I, Marquez DM, Spitzer MH, Lanier LL (2022 Mar 23). Influence of self-MHC class I recognition on the dynamics of Natural Killer cell responses to cytomegalovirus infection Journal of immunology (Baltimore, Md. : 1950), 208(7), 1742-1754. . PMCID: 8976824.
85.) Matsumoto S, Traber MG, Leonard SW, Choi J, Fang X, Maishan M, Wick KD, Jones KD, Calfee CS, Gotts JE, Matthay MA (2022 Mar 23). Aerosolized vitamin E acetate causes oxidative injury in mice and in alveolar macrophages American Journal of Physiology - Lung Cellular and Molecular Physiology, 322(6), L771-L783. . PMCID: 9109788.
86.) Xie G, Moron-Lopez S, Siegel DA, Yin K, Polos A, Cohen J, Greenblatt RM, Tien PC, Lee SA, Yukl SA, Roan NR (2022 Mar 16). Common and divergent features of T cells from blood, gut, and genital tract of ART-treated HIV+ women Journal of immunology (Baltimore, Md. : 1950), 208(7), 1790-1801. . PMCID: 8976750.
87.) Lamy R, Wolf M, Bispo C, Clay SM, Zheng S, Wolfreys F, Pan P, Chan MF (2022 Feb 25). Characterization of Recruited Mononuclear Phagocytes following Corneal Chemical Injury. International journal of molecular sciences, 23(5), . . PMID: 35269717.
88.) Cautivo KM, Matatia PR, Lizama CO, Mroz NM, Dahlgren MW, Yu X, Sbierski-Kind J, Taruselli MT, Brooks JF, Wade-Vallance A, Caryotakis SE, Chang AA, Liang HE, Zikherman J, Locksley RM, Molofsky AB (2022 Feb 8). Interferon gamma constrains type 2 lymphocyte niche boundaries during mixed inflammation Immunity, 55(2), 254-271.e7. . PMCID: 8852844.
89.) Wong E, Nguyen N, Hellman J (2021 Nov 10). Isolation of Primary Mouse Lung Endothelial Cells Journal of visualized experiments : JoVE, (177), 10.3791/63253. . PMCID: 11101010.
90.) Boothby IC, Kinet MJ, Boda DP, Kwan EY, Clancy S, Cohen JN, Habrylo I, Lowe MM, Pauli M, Yates AE, Chan JD, Harris HW, Neuhaus IM, McCalmont TH, Molofsky AB, Rosenblum MD (2021 Nov). Early-life inflammation primes a T helper 2 cell-fibroblast niche in skin. Nature, 599(7886), 667-672. doi: 10.1038/s41586-021-04044-7. PMID: 34707292.
91.) Dong S, Hiam-Galvez KJ, Mowery CT, Herold KC, Gitelman SE, Esensten JH, Liu W, Lares AP, Leinbach AS, Lee M, Nguyen V, Tamaki SJ, Tamaki W, Tamaki CM, Mehdizadeh M, Putnam AL, Spitzer MH, Ye CJ, Tang Q, Bluestone JA (2021 Sep 22). The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type 1 diabetes. JCI insight, 6(18), . . PMID: 34324441.
92.) Ahanger SH, Delgado RN, Gil E, Cole MA, Zhao J, Hong SJ, Kriegstein AR, Nowakowski TJ, Pollen AA, Lim DA (2021 Sep). Distinct nuclear compartment-associated genome architecture in the developing mammalian brain. Nature neuroscience, 24(9), 1235-1242. doi: 10.1038/s41593-021-00879-5. PMID: 34239128.
93.) Rutsch N, Chamberlain CE, Dixon W, Spector L, Letourneau-Freiberg LR, Lwin WW, Philipson LH, Zarbock A, Saintus K, Wang J, German MS, Anderson MS, Lowell CA (2021 Aug). Diabetes With Multiple Autoimmune and Inflammatory Conditions Linked to an Activating SKAP2 Mutation. Diabetes care, 44(8), 1816-1825. . PMID: 34172489.
94.) Hwang B, Lee DS, Tamaki W, Sun Y, Ogorodnikov A, Hartoularos GC, Winters A, Yeung BZ, Nazor KL, Song YS, Chow ED, Spitzer MH, Ye CJ (2021 Aug). SCITO-seq: single-cell combinatorial indexed cytometry sequencing. Nature methods, 18(8), 903-911. doi: 10.1038/s41592-021-01222-3. PMID: 34354295.
95.) Kilinc S, Paisner R, Camarda R, Gupta S, Momcilovic O, Kohnz RA, Avsaroglu B, L'Etoile ND, Perera RM, Nomura DK, Goga A (2021 Jul 12). Oncogene-regulated release of extracellular vesicles. Developmental cell, 56(13), 1989-2006.e6. . PMID: 34118203.
96.) Moron-Lopez S, Xie G, Kim P, Siegel DA, Lee S, Wong JK, Price JC, Elnachef N, Greenblatt RM, Tien PC, Roan NR, Yukl SA (2021 Jul). Tissue-specific differences in HIV DNA levels and mechanisms that govern HIV transcription in blood, gut, genital tract and liver in ART-treated women. Journal of the International AIDS Society, 24(7), e25738. doi: 10.1002/jia2.25738. PMID: 34235864.
97.) Lee LM, Zhang H, Lee K, Liang H, Merleev A, Vincenti F, Maverakis E, Thomson AW, Tang Q (2021 Jun 18). A Comparison of Ex Vivo Expanded Human Regulatory T Cells Using Allogeneic Stimulated B Cells or Monocyte-Derived Dendritic Cells Frontiers in Immunology, 12(), 679675. . PMCID: 8253048.
98.) Kilinc S, Paisner R, Camarda R, Gupta S, Momcilovic O, Kohnz RA, Avsaroglu B, L’Etoile ND, Perera RM, Nomura DK, Goga A (2021 Jun 11). Oncogene Regulated Release of Extracellular Vesicles Developmental cell, 56(13), 1989-2006.e6. . PMCID: 8292920.
99.) Simonds EF, Lu ED, Badillo O, Karimi S, Liu EV, Tamaki W, Rancan C, Downey KM, Stultz J, Sinha M, McHenry LK, Nasholm NM, Chuntova P, Sundström A, Genoud V, Shahani SA, Wang LD, Brown CE, Walker PR, Swartling FJ, Fong L, Okada H, Weiss WA, Hellström M (2021 Jun). Deep immune profiling reveals targetable mechanisms of immune evasion in immune checkpoint inhibitor-refractory glioblastoma. Journal for immunotherapy of cancer, 9(6), . . PMID: 34083417.
100.) Hyrenius-Wittsten A, Su Y, Park M, Garcia JM, Alavi J, Perry N, Montgomery G, Liu B, Roybal KT (2021 Apr 28). SynNotch CAR Circuits Enhance Solid Tumor Recognition and Promote Persistent Anti-tumor Activity in Mouse Models Science translational medicine, 13(591), eabd8836. . PMCID: 8594452.
101.) Hyrenius-Wittsten A, Su Y, Park M, Garcia JM, Alavi J, Perry N, Montgomery G, Liu B, Roybal KT (2021 Apr 28). SynNotch CAR circuits enhance solid tumor recognition and promote persistent antitumor activity in mouse models. Science translational medicine, 13(591), . . PMID: 33910981.
102.) Xie G, Luo X, Ma T, Frouard J, Neidleman J, Hoh R, Deeks SG, Greene WC, Roan NR (2021 Apr 27). Characterization of HIV-induced remodeling reveals differences in infection susceptibility of memory CD4+ T cell subsets in vivo. Cell reports, 35(4), 109038. . PMID: 33910003.
103.) Striedinger K, Barruet E, Pomerantz JH (2021 Mar 19). Purification and preservation of satellite cells from human skeletal muscle. STAR protocols, 2(1), 100302. doi: 10.1016/j.xpro.2021.100302. PMID: 33554137.
104.) Deuse T, Hu X, Agbor-Enoh S, Jang MK, Alawi M, Saygi C, Gravina A, Tediashvili G, Nguyen VQ, Liu Y, Valantine H, Lanier LL, Schrepfer S (2021 Mar 1). The SIRPα-CD47 immune checkpoint in NK cells. The Journal of experimental medicine, 218(3), . . PMID: 33416832.
105.) Calabrese DR, Aminian E, Mallavia B, Liu F, Cleary SJ, Aguilar OA, Wang P, Singer JP, Hays SR, Golden JA, Kukreja J, Dugger D, Nakamura M, Lanier LL, Looney MR, Greenland JR (2021 Feb 1). Natural killer cells activated through NKG2D mediate lung ischemia-reperfusion injury. The Journal of clinical investigation, 131(3), . . PMID: 33290276.
106.) Lee LM, Zhang H, Lee K, Liang H, Merleev A, Vincenti F, Maverakis E, Thomson AW, Tang Q (2021). A Comparison of Ex Vivo Expanded Human Regulatory T Cells Using Allogeneic Stimulated B Cells or Monocyte-Derived Dendritic Cells. Frontiers in immunology, 12(), 679675. doi: 10.3389/fimmu.2021.679675. PMID: 34220826.
107.) da Silva Chaves SN, Dutra Costa BP, Vidal Gomes GC, Lima-Maximino M, Pacheco Rico E, Maximino C (2020 May 29). NOS-2 participates in the behavioral effects of ethanol withdrawal in zebrafish. Neuroscience letters, 728(), 134952. doi: 10.1016/j.neulet.2020.134952. PMID: 32283112.
108.) Arger NK, Machiraju S, Allen IE, Woodruff PG, Koth LL (2020). T-bet Expression in Peripheral Th17.0 Cells Is Associated With Pulmonary Function Changes in Sarcoidosis. Frontiers in immunology, 11(), 1129. . PMID: 32774332.
