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All Facilities >> University of California Berkeley >> UCB-QB3 Genomics
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Shana McDevitt
Last Updated: 05/02/2024
QB3 Genomics is a partnership between the Vincent J. Coates Genomics Sequencing Laboratory (GSL), the Functional Genomics Laboratory (FGL), and the Computational Genomics Resource Laboratory (CGRL). QB3 Genomics supports genomics research at UC Berkeley and the greater research community.
QB3 Genomics offers consultation on experimental design and data analysis, a full suite of technical services related to high throughput sequencing and genomics experiments, and access to high performance computational infrastructure.
Services are offerred outside of University of California Berkeley
Consulting is offerred outside of University of California Berkeley
10X Genomics Chromium Plus Genetic Analyzer
Genetic analyzer, referred to as Chromium Controller for combining large partition numbers with a diverse barcode library to generate >100,000 barcode-containing partitions. [Product Link]
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Advanced Analytical Technologies, Inc. FEMTO Pulse Fragment Analyzer
The Femtopulse is a fragment analyzer that provides a pulsed-field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into the femtogram range. The ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per µL input concentration make the Femto Pulse system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples. [Product Link]
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Agilent 2100 Bioanalyzer Instrument
This Bioanalyzer Instrument is used for sample quality control of biomolecules. [Product Link]
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Agilent 5300 Fragment Analyzer System
Fragment Analyzer System can separate up to 48 or 96 samples in parallel. [Product Link]
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Illumina cBot Genetic Amplifier
Genetic amplifier that uses amplification to create single molecule DNA templates and dispense reagents. It also controls reaction times, flow rates, and temperatures. [Product Link]
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Illumina HiSeq 3000/HiSeq 4000 Systems
Leverage patterned flow cell technology to provide rapid, high performance sequencing Perform production scale, high throughput exome or transcriptome sequencing projects quickly and economically. [Product Link]
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Illumina MiSeq System
Access focused applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling, and more. MiSeq reagents enable up to 15 Gb of output with 25 million sequencing reads and 2 × 300 bp read lengths. [Product Link]
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Illumina NextSeq 1000 and NextSeq 2000 Sequencing Systems
Benchtop sequencers that allow you to explore new science across variety of current and emerging applications, with higher efficiency and fewer restraints. [Product Link]
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Illumina NovaSeq 6000 Sequencing System
Unleashes groundbreaking innovations that leverage our technology Now you can get scalable throughput and flexibility for virtually any sequencing method, genome, and scale of project. [Product Link]
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Pippin Prep
Facilitates library construction system for NGS platforms, and is recommended by Illumina and Ion Torrent for certain workflows. The platform features the ability to collect narrow and even fragment distributions, as well as the flexibility to collect wide ranges of fragments with minimal effort. Target sizes or ranges of sizes are entered in software, and fractions are collected in buffer. Up to 5 samples per gel cassette may be run, with no possibility of cross contamination. [Product Link]
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Sage Science BluePippin system
Used for DNA Size Selection for Next-Gen Sequencing, with Pulsed-Field (100bp ? 50kb).BluePippin has the DNA capabilities of the Pippin Prep, plus the extra benefit of pulsed-field electrophoresis for resolving and collecting high molecular weight DNA. For long-range genomic applications, high-pass filtering allows users to collect all fragments above a size threshold set by the user. Target sizes or ranges of sizes are entered in software, and fractions are collected in buffer. Up to 5 samples/gel cassette may be run, with no possibility of cross contamination. [Product Link]
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Qiagen QIAcuity Digital PCR System
PacBio Sequel II System
ONT MinION System
Sage Science SageELF System
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https://coremarketplace.org/?FacilityID=1346Institution
Institution ROR ID: https://ror.org/01an7q238Keywords:
USEDit, ABRF, genomics research, high throughput sequencing and genomics experiments, high performance computational infrastructure access
Resource Type:
access service resource, service resource, core facility
Citation:
University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170)
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Facility Details
About This Facility
Services and Equipment
Publications
Awards & Associations
Metadata
Other Facilities at this Institution:
