The CoreMarketplace: Data Analysis Core

1 Washington St

Blacksburg, VA 24061-0477

United States

https://www.arc.vt.edu

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Primary Contact:

Robert Settlage

Facility Details

VBI's Data Analysis Core (DAC) is a dedicated multi-user resource that provides state-of-the-art data analysis support for biologically related research. The DAC was created to remove data analysis as an obstacle to performing the highly complex and data-intensive experiments required to solve modern problems in life science research. We have experienced staff available to provide guidance and support in designing and executing on properly powered and controlled experiments.

Services

At the DAC, a wide range of services are available to solve the data analysis bottleneck. We offer services ranging from training and self-serve workstations preloaded with necessary software to full service project support. Next generation sequencing projects include the analysis, assembly, and annotation of genomic sequence information including protein function prediction, variant/allele discovery, and expression analysis (CHIP-seq, RNA-seq, DNA-reseq, SNP-seq, and others). For gene expression (Affymetrix or custom), we offer statistical expression analysis, normalization, quality analysis, filtering customized to the experimental design, hierarchical clustering, and, when appropriate, function analysis. Custom array design for both oligonucleotide and proteomics arrays as well as target design for deep sequencing experiments are also available. For proteomics, we offer statistical expression analysis, pathway and GO analysis. All services result in manuscript-ready figures and text.

Facility Policies

Services are offerred outside of

Consulting is offerred outside of Virginia Tech

Last Updated: 05/19/2025

Services offered:

Computational - Application Development

Computational - Bioinformatics

Computational - Biostatistics

Computational - High Performance Computing

Copy Number Variation (CNV)

Data Analysis

Facility Equipment

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Publications

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Metadata

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https://coremarketplace.org/?FacilityID=349

Institution

Institution ROR ID: https://ror.org/02smfhw86

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Other Facilities at Virginia Tech

VT Surface Analysis LaboratoryRRID:SCR_027504

Services:

Surface, Interfacial, And Bulk Characterization Of Materials Via High-resolution Imaging And Spectroscopy

X-ray Diffraction And Scattering

X-ray Spectrometry

Resources:

Materials Characterization

Contact Info:

Nicholas J. Popczun

800 West Campus Drive

Blacksburg, VA 24061 - United States

https://chem.vt.edu/analyticalservices/surface-analysis-lab.html

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RRID:

RRID:SCR_027504

Other CIDs:

1531834

Description:

Analytical research facility specializing in X-ray materials characterization techniques, sample preparation and data analysis.

This facility provides services outside its institution

This facility provides consulting outside its institution

Last updated:

10/07/2025

Facility for Advanced Imaging and MicroscopyRRID:SCR_027348

Services:

Consultations

Image Aquisition

Image Processing And Analysis

Training

Resources:

Contact Info:

Emery Ng

1015 Life Science Circle

Blacksburg, VA 24061

https://fralinlifesci.vt.edu/core-services/faim.html

RRID:

RRID:SCR_027348

Description:

Associated with Virginia Tech's Fralin Life Sciences Institute, this light microscopy research resource facility offers confocal, extended and super resolution, and lightsheet imaging options, as well as assistance and training for researchers. The FAIM also has educational resources available for light microscopy basics, and image processing and analysis.

This facility provides services outside its institution

This facility provides consulting outside its institution

Last updated:

09/19/2025

Genomics Sequencing CenterRRID:SCR_017958

Services:

DNA Analysis

Genomics

Genotyping

Microbiome

Real-time qPCR

RNA analysis

RNA Integrity

Sequencing - Capillary Sequencing

Sequencing - DNA Sequencing

Sequencing - Next Generation Sequencing (NGS)

Resources:

Genomics / Genome Analysis and Technologies

Contact Info:

Rich Helm

Virginia Tech Fralin Sciences Institute

1015 Life Sciences Circle

Blacksburg, VA 24061-0477 - United States of America

https://fralinlifesci.vt.edu/core-services/genomics-sequencing-center.html

Google Maps Location

RRID:

RRID:SCR_017958

Description:

The Genomics Sequencing Center (GSC) at Virginia Tech Fralin Institute is a dedicated multi-user resource for the development and application of state-of-the-art, Next-Generation Sequencing (NGS) technologies. GSC is a “one-stop shop” providing rapid, cost-effective, experimental design consultation, and genomic and functional-genomics services using Illumina’s NovaSeq, NextSeq and MiSeq systems. Quality control and quality assurance metrics are incorporated into each standard operating procedure to monitor performance of each service provided. Liquid handling robots and a custom Laboratory Information Management System (LIMS) increase throughput, efficiency and quality of the data generated and allow sample tracking in real time. We have the expertise and capacity to extend our support to research projects performed at any scale, in a very efficient and organized manner. In fact, GSC has supported over 700 individual PIs worldwide. We also provide our expertise and capabilities for grant applications to various funding agencies.

SERVICES OFFERED:

Next-Gen Sequencing Platforms:
NovaSeq
NextSeq
MiSeq
Thermo Ion S5

DNA Library Preps:
DNA-Seq
Nextera
Methy-Seq
Exome Capture
16S/18S/ITS Amplicon Sequencing
Metagenomic Sequencing

RNA Library Preps:
mRNA-Stranded-Seq
Small RNA-Seq
Total Stranded RNA-Seq
Ultra Low Input mRNA-Seq (10-100 cells)

Multiplexing large number of samples

qPCR services using SYBR Green and TagMan assays

Nucleic Acid QC:
Agilent BioAnalyzer and TapeStation
qPCR services of NGS libraries
Qubit

Sanger Sequencing Services

This facility provides services outside its institution

This facility provides consulting outside its institution

Last updated:

06/12/2023

VT-Mass Spectrometry IncubatorRRID:SCR_017956

Services:

Mass Spectrometry

Metabolomics

Metabolomics Platform

Phosphoproteomics

Proteomics

SDS-PAGE

Untargeted Mass Spectrometry

Resources:

Mass Spectrometry

Contact Info:

Rich Helm

Steger Hall

1015 LIfe Science Circle

Blacksburg, VA 24061 - United States of America

https://www.biochem.vt.edu/research/VTmassspec.html

Google Maps Location

RRID:

RRID:SCR_017956

Description:

Targeted and untargeted metabolomics and proteomics resources

This facility provides services outside its institution

This facility provides consulting outside its institution

Last updated:

04/25/2022

Data Analysis Core

Primary Contact:

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Other Facilities at Virginia Tech

VT Surface Analysis LaboratoryRRID:SCR_027504

Facility for Advanced Imaging and MicroscopyRRID:SCR_027348

Genomics Sequencing CenterRRID:SCR_017958

VT-Mass Spectrometry IncubatorRRID:SCR_017956

(To see more facility information, click the in the upper right)

Contact Robert Settlage

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Data Analysis Core

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