The CoreMarketplace: VAI

Full service Next Generation Sequencing, single cell Genomics, and Spatial Transcriptomics facility. Provides experimental design support, library generation, and Illumina and Nanopore Sequencing.

Facility Policies

Services are offerred outside of Van Andel Institute

Consulting is offerred outside of Van Andel Institute

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Services offered:

Reduced Representation Bisulfite Sequencing

Sequencing - Next Generation Sequencing (NGS)

Single-cell Sequencing

Spatial Transcriptomics

Whole Exome Sequencing

Whole Genome Sequencing

Facility Equipment

No additional equipment has been listed

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Publications

Publications associated with this facility (Click To View):

1.) Chomiak AA, Tiedemann RL, Liu Y, Kong X, Cui Y, Wiseman AK, Thurlow KE, Cornett EM, Topper MJ, Baylin SB, Rothbart SB (2024 Mar 27). Select EZH2 inhibitors enhance viral mimicry effects of DNMT inhibition through a mechanism involving NFAT:AP-1 signaling Science Advances, 10(13), eadk4423. . PMCID: 10971413.

2.) Goralski TM, Meyerdirk L, Breton L, Brasseur L, Kurgat K, DeWeerd D, Turner L, Becker K, Adams M, Newhouse DJ, Henderson MX (2024 Mar 26). Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology Nature Communications, 15(), 2642. . PMCID: 10966039.

3.) Booms A, Pierce SE, van der Schans EJC, Coetzee GA (2024 Feb 16). Parkinson's disease risk enhancers in microglia. iScience, 27(2), 108921. . PMID: 38323005.

4.) Tiedemann RL, Hrit J, Du Q, Wiseman AK, Eden HE, Dickson BM, Kong X, Chomiak AA, Vaughan RM, Hebert JM, David Y, Zhou W, Baylin SB, Jones PA, Clark SJ, Rothbart SB (2024 Feb 16). UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation. bioRxiv : the preprint server for biology, (), . . PMID: 38405904.

5.) Booms A, Pierce SE, van der Schans EJ, Coetzee GA (2024 Jan 17). Parkinson’s disease risk enhancers in microglia iScience, 27(2), 108921. . PMCID: 10845915.

6.) Panzeri I, Fagnocchi L, Apostle S, Tompkins M, Wolfrum E, Madaj Z, Hostetter G, Liu Y, Schaefer K, Chih-Hsiang Y, Bergsma A, Drougard A, Dror E, Chandler D, Schramek D, Triche TJ Jr, Pospisilik JA (2023 Sep 15). Developmental priming of cancer susceptibility bioRxiv, (), 2023.09.12.557446. . PMCID: 10515831.

7.) Pérez-Mojica JE, Enders L, Lau KH, Lempradl A (2023 Sep 15). Single-embryo RNA sequencing for continuous and sex-specific gene expression analysis on Drosophila. STAR protocols, 4(3), 102535. . PMID: 37682716.

8.) Panzeri I, Fagnocchi L, Apostle S, Tompkins M, Wolfrum E, Madaj Z, Hostetter G, Liu Y, Schaefer K, Chih-Hsiang Y, Bergsma A, Drougard A, Dror E, Chandler D, Schramek D, Triche TJ Jr, Pospisilik JA (2023 Sep 15). Developmental priming of cancer susceptibility. bioRxiv : the preprint server for biology, (), . . PMID: 37745326.

9.) Pérez-Mojica JE, Enders L, Lau KH, Lempradl A (2023 Sep 7). Single-embryo RNA sequencing for continuous and sex-specific gene expression analysis on Drosophila STAR Protocols, 4(3), 102535. . PMCID: 10493594.

10.) Paul EN, Carpenter TJ, Fitch S, Sheridan R, Lau KH, Arora R, Teixeira JM (2023 Jul 3). Cysteine-rich intestinal protein 1 is a novel surface marker for human myometrial stem/progenitor cells Communications Biology, 6(), 686. . PMCID: 10317972.

11.) Paul EN, Carpenter TJ, Fitch S, Sheridan R, Lau KH, Arora R, Teixeira JM (2023 Jul 3). Cysteine-rich intestinal protein 1 is a novel surface marker for human myometrial stem/progenitor cells. Communications biology, 6(1), 686. . PMID: 37400623.

12.) Goralski T, Meyerdirk L, Breton L, Brasseur L, Kurgat K, DeWeerd D, Turner L, Becker K, Adams M, Newhouse D, Henderson MX (2023 May 17). Spatial transcriptomics reveals molecular dysfunction associated with Lewy pathology bioRxiv, (), 2023.05.17.541144. . PMCID: 10245657.

13.) Goralski T, Meyerdirk L, Breton L, Brasseur L, Kurgat K, DeWeerd D, Turner L, Becker K, Adams M, Newhouse D, Henderson MX (2023 May 17). Spatial transcriptomics reveals molecular dysfunction associated with Lewy pathology. bioRxiv : the preprint server for biology, (), . . PMID: 37292685.

14.) Paul EN, Carpenter TJ, Fitch S, Sheridan R, Lau KH, Arora R, Teixeira JM (2023 Mar 18). Cysteine-Rich Intestinal Protein 1 is a Novel Surface Marker for Myometrial Stem/Progenitor Cells bioRxiv, (), 2023.02.20.529273. . PMCID: 10054937.

15.) Paul EN, Carpenter TJ, Fitch S, Sheridan R, Lau KH, Arora R, Teixeira JM (2023 Mar 18). Cysteine-Rich Intestinal Protein 1 is a Novel Surface Marker for Myometrial Stem/Progenitor Cells. bioRxiv : the preprint server for biology, (), . . PMID: 36993447.

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Associations

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=1600
https://coremarketplace.org/RRID:SCR_022913

Institution

Institution ROR ID: https://ror.org/00wm07d60

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

USEDit, ABRF, Next Generation Sequencing, single cell Genomics, Spatial Transcriptomics facility

VAI - Genomics Core (Genomics / Genome Analysis and Technologies)

Primary Contact:

Facility RRID

Facility Details

Facility Policies

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Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

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