The CoreMarketplace: Single Cell Genomics Facility

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Single Cell Genomics Facility (Genomics / Genome Analysis and Technologies)

Facility Details

About This Facility

Services and Equipment

Publications

Awards & Associations

Metadata

Other Facilities at this Institution:

Animal Behavior Core

Bio-Imaging and Analysis Facility

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Cell Manipulation Facility

Cell Processing Facility

Cincinnati Biobank Core Facility

Comprehensive Rodent and Radiation Facility

Data Management and Analysis Collaborative

Discover Together Biobank

Genomics Sequencing Facility

Imaging Research Center

Informatics Services 4 Research

Integrated Pathology Research Facility

Investigational Pharmacy

Mass Spectrometry Facility (Clinical and Biomedical)

Media Lab Facility

MEG Research Facility

Microbiome Facility

NMR-based Metabolomics Core Facility

Office for Clinical and Translational Reearch

Pluripotent Stem Cell Facility

Research Flow Cytometry Facility

Transgenic Animal and Genome Editing Facility

Translational Trials and Development Lab

Vector Production Facility

Viral Vector Core

Cincinnati Children's Hospital

3333 Burnet Avenue

Cincinnati, OH 45229-3026

United States

https://www.cincinnatichildrens.org/research/cores/single-cell-genomics

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Primary Contact:

Rathnakumr Kumaragurubaran

Last Updated: 05/02/2024

Facility RRID

RRID:SCR_022653

Facility Details

The Single Cell Genomics Core (SCGC) is available to perform the expression level analysis of thousands of genes in parallel.

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Services offered:

Facility Equipment

No additional equipment has been listed

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Publications

Publications associated with this facility (Click To View):

1.) Stepanchick E, Wilson A, Sulentic AM, Choi K, Hueneman K, Starczynowski DT, Chlon TM (2024 Jun 27). DDX41 haploinsufficiency causes inefficient hematopoiesis under stress and cooperates with p53 mutations to cause hematologic malignancy Leukemia, 38(8), 1787-1798. . PMCID: 11286521.

2.) Wayman JA, Yang Z, Angerman E, Bonkowski E, Jurickova I, Chen X, Bejjani AT, Parks L, Parameswaran S, Miethke AG, VanDussen KL, Dhaliwal J, Weirauch MT, Kottyan LC, Denson LA, Miraldi ER (2024 Feb 13). Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk. bioRxiv : the preprint server for biology, (), . . PMID: 38405748.

3.) He H, Bell SM, Davis AK, Zhao S, Sridharan A, Na CL, Guo M, Xu Y, Snowball J, Swarr DT, Zacharias WJ, Whitsett JA (2023 Dec 20). PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function bioRxiv, (), 2023.12.20.570481. . PMCID: 10769259.

4.) Múnera JO, Kechele DO, Bouffi C, Qu N, Jing R, Maity P, Enriquez JR, Han L, Campbell I, Mahe MM, McCauley HA, Zhang X, Sundaram N, Hudson JR, Zarsozo-Lacoste A, Pradhan S, Tominaga K, Sanchez JG, Weiss AA, Chatuvedi P, Spence JR, Hachimi M, North T, Daley GQ, Mayhew CN, Hu YC, Takebe T, Helmrath MA, Wells JM (2023 Nov 2). Development of functional resident macrophages in human pluripotent stem cell-derived colonic organoids and human fetal colon Cell stem cell, 30(11), 1434-1451.e9. . PMCID: 10913028.

5.) Shi T, Burg AR, Caldwell JT, Roskin KM, Castro-Rojas CM, Chukwuma PC, Gray GI, Foote SG, Alonso JA, Cuda CM, Allman DA, Rush JS, Regnier CH, Wieczorek G, Alloway RR, Shields AR, Baker BM, Woodle ES, Hildeman DA (2023 Jul 17). Single-cell transcriptomic analysis of renal allograft rejection reveals insights into intragraft TCR clonality The Journal of Clinical Investigation, 133(14), e170191. . PMCID: 10348771.

6.) Shanmuganad S, Ferguson A, Paranjpe A, Cianciolo EE, Katz JD, Herold MJ, Hildeman DA (2023 Mar 2). Subset-specific and temporal control of effector and memory CD4+ T cell survival. bioRxiv : the preprint server for biology, (), . . PMID: 36909576.

7.) Shi T, Burg AR, Caldwell JT, Roskin K, Castro-Rojas CM, Chukwuma PC, Gray GI, Foote SG, Alonso J, Cuda CM, Allman DA, Rush JS, Regnier CH, Wieczorek G, Alloway RR, Shields AR, Baker BM, Woodle ES, Hildeman DA (2023 Feb 13). Single cell transcriptomic analysis of renal allograft rejection reveals novel insights into intragraft TCR clonality. bioRxiv : the preprint server for biology, (), . . PMID: 36798151.

8.) Khorki ME, Shi T, Cianciolo EE, Burg AR, Chukwuma PC, Picarsic JL, Morrice MK, Woodle ES, Maltzman JS, Ferguson A, Katz JD, Baker BM, Hildeman DA (2023). Prior viral infection primes cross-reactive CD8+ T cells that respond to mouse heart allografts. Frontiers in immunology, 14(), 1287546. . PMID: 38143762.

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Associations

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Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=1495
https://coremarketplace.org/RRID:SCR_022653

Institution

Institution ROR ID: https://ror.org/01hcyya48

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

USEDit, ABRF, expression level analysis, genes in parallel

Resource Type:

access service resource, core facility, service resource

Citation:

Cincinnati Children's Hospital Single Cell Genomics Core Facility (RRID:SCR_022653)

Single Cell Genomics Facility (Genomics / Genome Analysis and Technologies)

Primary Contact:

Facility RRID

Facility Details

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Facility Profile QR Code (links to this profile)

(To see more facility information, click the in the upper right)

Contact Rathnakumr Kumaragurubaran

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Single Cell Genomics Facility

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