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3.) Deiter CS, de Jong FC, Olislagers M, Jordan KR, Zuiverloon TCM, Costello JC (2026 Sep 22). Stromal innervation is prognostic in non-muscle-invasive bladder cancer and predicted by a distinct microenvironmental transcriptomic signature. bioRxiv : the preprint server for biology, (), . . PMCID: 13622128.
4.) Mikeska RG, Feldman LER, Woodruff ER, Iwanaga R, Linder KE, Yamamoto TM, Sompel K, Jordan KR, Post MD, Zoller M, Bitler BG, Marjon NA (2026 Sep 1). Inhibiting CXCR2 Remodels the Tumor Microenvironment and Blunts Tumor Progression and Dissemination of High-Grade Serous Carcinoma. Cancer research communications, 6(9), 2256-2270. . PMCID: 13602021.
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9.) Van Kleunen LB, Bowman G, Stockman SE, Townsend HA, Barrios L, Jordan KR, Wolsky RJ, Behbakht K, Sikora MJ, Richer JK, Hu J, Bitler BG, Clauset A (2026 Apr 24). On the predictability of progression-free survival in ovarian cancer from NanoString gene expression data. bioRxiv : the preprint server for biology, (), . . PMCID: 13131502.
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11.) Alvarez-Eraso KLF, Contreras-Zárate MJ, Goodspeed A, Costello J, Jaramillo-Gómez JA, Koliavas S, Marquez-Ortiz RA, Fox MS, Ormond DR, Kabos P, Rincon M, Cittelly DM (2026 Feb 23). Estradiol Reprograms Microglia to Create an Immune-Suppressed Niche Permissive to Breast Cancer Brain Metastasis. bioRxiv : the preprint server for biology, (), . . PMID: 42124594.
12.) Inamo J, Fierkens R, Clay MR, Jonsson AH, Lin C, Hayes K, Rogers N, Leach H, Yomogida K (2026 Jan 9). Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis. JCI insight, 11(1), . . PMCID: 12890527.
13.) Zohaib Ali M, Dutt TS, Patterson J, Minic A, Jordan KR, Maloney Norcross SE, Meibohm B, Gonzalez-Juarrero M (2026). Spatial and temporal immune landscapes of non-necrotic granulomas in two murine tuberculosis models with divergent disease outcomes. Frontiers in Immunology, 17(), . . PMCID: 13519991.
14.) Budoff SA, Poleg-Polsky A (2025 Dec 30). A complete spatial map of mouse retinal ganglion cells reveals density and gene expression specializations. Proceedings of the National Academy of Sciences of the United States of America, 122(52), e2515449122. . PMCID: 12772174.
15.) Alexander BN, Kim S, Wells KL, Hunter MJ, Toole KP, Wemlinger SM, Regan DP, Getahun A, Smith MJ (2025 Dec 22). Deletion of Ptpn2 in B cells promotes autoimmunity via TLR and JAK/STAT signaling. JCI insight, 10(24), . . PMCID: 12890481.
16.) Santos FP, Beck L, DeCurtis E, Griffin AM, Balas MM, Marchioni C, Kumanovics A, Taylor MR, Jordan KR, Kirkpatrick CH, Johnson AM (2025 Dec 9). Characterization of an immunodeficiency-associated EZH2 variant bioRxiv, (), 2025.12.08.692979. . PMCID: 12709481.
17.) Veo B, Wang D, DeSisto J, Pierce A, Brunt B, Bompada PC, Donson A, Goodspeed A, Smart K, Foreman N, Dahl N, Vibhakar R (2025 Nov 25). Single-cell multi-omics identifies metabolism-linked epigenetic reprogramming as a driver of therapy-resistant medulloblastoma Nature Communications, 16(), 10470. . PMCID: 12647721.
18.) Joyce LR, Akbari MS, Nguyen DT, Spencer BL, Rahkola J, McIver KS, Horswill AR, Doran KS, Keogh RA (2025 Nov 25). Global genome analysis identifies glycolipids and lipoteichoic acid alanylation as contributors to group B streptococcal diabetic wound infection. Cell reports, 44(11), 116510. . PMID: 41191485.
19.) Owen MC, Li DY, Shin H, Gu W, Parvathaneni A, Kadyrov FF, Wang X, Sticco-Ivins M, Bonnici G, Nelson SL, Dun H, Hyacinth S, Cain MT, Pedroza A, Dalal A, Sallam K, Boyd J, Woo J, Amrute JM, Cheng P, Lavine KJ, Kopecky BJ (2025 Nov 21). Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy Research Square, (), rs.3.rs-7812112. . PMCID: 12668176.
20.) Joyce LR, Akbari MS, Nguyen DT, Spencer BL, Rahkola J, McIver KS, Horswill AR, Doran KS, Keogh RA (2025 Nov 4). Global genome analysis identifies glycolipids and lipoteichoic acid alanylation as contributors to Group B streptococcal diabetic wound infection Cell reports, 44(11), 116510. . PMCID: 12664321.
21.) Lentz RW, Lang J, Pitts TM, Blatchford P, Hu J, Jordan KR, Van Bokhoven A, Bagby SM, Dominguez ATA, Binns CA, Robinson HR, Balmaceda N, Baiyee E, Leal AD, Kim SS, Davis SL, Lieu CH, Wadlow RC, Spencer K, Scott AJ, Boland PM, Hochster HS, Messersmith WA (2025 Nov 1). Phase II Clinical Trial and Preclinical Evaluation of a Novel CD47 Blockade Combination in Refractory Microsatellite-Stable Metastatic Colorectal Cancer. Cancer research communications, 5(11), 2039-2052. . PMCID: 12631056.
22.) Farrell CL, Jordan M, Posey JN, Jordan KR, Gandjeva A, Nozik ES, Stenmark KR, Tuder RM, Graham BB, Delaney CA (2025 Oct). Platelet-Macrophage Aggregates in Remodeled Vessels of Patients With Pulmonary Arterial Hypertension. Pulmonary circulation, 15(4), e70174. . PMCID: 12521612.
23.) Inamo J, Fierkens R, CLay MR, Jonsson AH, Lin C, Hayes K, Rogers N, Leach H, Yomogida K (2025 Aug 8). Subcellular spatial transcriptomics reveals immune–stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis medRxiv, (), 2025.08.05.25332835. . PMCID: 12396606.
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25.) Li Y, Jacques S, Gaikwad H, Nebbia M, Banda NK, Holers VM, Tomlinson SA, Scheinman RI, Monte A, Saba L, Lasda E, Hasselberth J, Busquet N, Zelek WM, Moghimi SM, Simberg D (2025 Jul 9). Enhanced immunocompatibility and hemocompatibility of nanomedicines across multiple species using complement pathway inhibitors Science Advances, 11(28), eadw1731. . PMCID: 12239973.
26.) Zarrella KM, Sheridan RM, Ware BC, Davenport BJ, da Silva MO, Vyshenska D, Martin AU, May NA, Weiskopf D, Hesselberth JR, Streblow DN, Greninger AL, Morrison TE (2025 Jun 25). Chikungunya virus persists in joint-associated macrophages and promotes chronic disease Research Square, (), rs.3.rs-6917990. . PMCID: 12270208.
27.) Woodruff ER, Bailey CA, To F, Manda V, Maltzahn JK, Sullivan TM, Boorgula MP, Recouvreux MS, Vianzon R, Conrad B, Gavin KM, Jordan KR, Klemm DJ, Orsulic S, Bitler BG, Watson ZL (2025 Jun 24). Ablation of hematopoietic stem cell derived adipocytes reduces tumor burden in syngeneic mouse models of high-grade serous carcinoma. bioRxiv : the preprint server for biology, (), . . PMID: 39345441.
28.) Lewis CV, Nguyen TN, Porfilio TE, Burciaga SD, Posey JN, Jordan M, Colon Hidalgo D, Stenmark KR, Mickael C, Sul C, Oberley-Deegan RE, Delaney C, Nozik ES (2025 Jun 1). Vascular EC-SOD limits the accumulation, proinflammatory profibrotic reprogramming, and hyaluronan binding of interstitial macrophages in hypoxia. American journal of physiology. Lung cellular and molecular physiology, 328(6), L885-L900. . PMCID: 12442531.
29.) Rosenbaum SR, Hughes CJ, Fields KM, Purdy SC, Gustafson AL, Wolin A, Hampton D, Shrivastava NM, Turner N, Danis E, Ebmeier C, Spoelstra N, Richer J, Jedlicka P, Costello JC, Zhao R, Ford HL (2025 May 7). EYA3 regulation of NF-κB and CCL2 suppresses cytotoxic NK cells in the premetastatic niche to promote TNBC metastasis Science Advances, 11(19), eadt0504. . PMCID: 12057687.
30.) Manes C, Guerrero Moreno M, Cimons J, D’Antonio MA, Brunetti TM, Harbell MG, Selva S, Mizenko C, Borko TL, Lasda EL, Hesselberth JR, Hsieh EW, Verneris MR, Piquet AL, Gapin L, Kedl RM, Klarquist J (2025 Apr 17). B cells shape naive CD8+ T cell programming The Journal of Clinical Investigation, 135(12), e190106. . PMCID: 12165804.
31.) Posey JN, Jordan M, Lewis CV, Sul C, Dobrinskikh E, Swindle D, Denorme F, Irwin D, Di Paola J, Stenmark K, Nozik ES, Delaney C (2025 Apr 8). Nbeal2 knockout mice are not protected against hypoxia-induced pulmonary vascular remodeling and pulmonary hypertension. Blood advances, 9(7), 1571-1584. . PMID: 39693512.
32.) Budoff SA, Poleg-Polsky A (2025 Feb 12). A Complete Spatial Map of Mouse Retinal Ganglion Cells Reveals Density and Gene Expression Specializations bioRxiv, (), 2025.02.10.637538. . PMCID: 11844403.
33.) Nguyen LL, Watson ZL, Ortega R, Woodruff ER, Jordan KR, Iwanaga R, Yamamoto TM, Bailey CA, To F, Lin S, Villagomez FR, Jeong AD, Guntupalli SR, Behbakht K, Gibaja V, Arnoult N, Chuong EB, Bitler BG (2024 Dec 3). EHMT1/2 inhibition promotes regression of therapy-resistant ovarian cancer tumors in a CD8 T cell-dependent manner Molecular cancer research : MCR, 22(12), 1117-1127. . PMCID: 11614706.
34.) Nguyen LL, Watson ZL, Ortega R, Woodruff ER, Jordan KR, Iwanaga R, Yamamoto TM, Bailey CA, To F, Lin S, Villagomez FR, Jeong AD, Guntupalli SR, Behbakht K, Gibaja V, Arnoult N, Chuong EB, Bitler BG (2024 Dec 3). EHMT1/2 Inhibition Promotes Regression of Therapy-Resistant Ovarian Cancer Tumors in a CD8 T-cell-Dependent Manner. Molecular cancer research : MCR, 22(12), 1117-1127. . PMID: 39136655.
35.) Van Kleunen LB, Ahmadian M, Post MD, Wolsky RJ, Rickert C, Jordan KR, Hu J, Richer JK, Brubaker LW, Marjon N, Behbakht K, Sikora MJ, Bitler BG, Clauset A (2024 Nov 4). The Spatial Structure of the Tumor Immune Microenvironment Can Explain and Predict Patient Response in High-Grade Serous Carcinoma. Cancer immunology research, 12(11), 1492-1507. . PMID: 39115368.
36.) Bhattacharya M, Spencer BL, Kwiecinski JM, Podkowik M, Putzel G, Pironti A, Shopsin B, Doran KS, Horswill AR (2024 Nov 2). Collagen binding adhesin restricts Staphylococcus aureus skin infection bioRxiv, (), 2024.11.01.621145. . PMCID: 11565922.
37.) Elias AD, Staley AW, Fornier M, Vidal GA, Alami V, Sams S, Spoelstra NS, Goodspeed A, Kabos P, Diamond JR, Shagisultanova E, Gallagher RI, Wulfkuhle JD, Petricoin EF, Zolman KL, McSpadden T, Jordan KR, Slansky JE, Borges VF, Gao D, Richer JK (2024 Oct 6). Clinical and immune responses to neoadjuvant fulvestrant with or without enzalutamide in ER+/Her2− breast cancer NPJ Breast Cancer, 10(), 88. . PMCID: 11455938.
38.) French JD, Haugen BR, Worden FP, Bowles DW, Gianoukakis AG, Konda B, Dadu R, Sherman EJ, McCue S, Foster NR, Nikiforov YE, Farias TDJ, Norman PJ, Wirth LJ (2024 Sep 3). Combination Targeted Therapy with Pembrolizumab and Lenvatinib in Progressive, Radioiodine-Refractory Differentiated Thyroid Cancers. Clinical cancer research : an official journal of the American Association for Cancer Research, 30(17), 3757-3767. doi: 10.1158/1078-0432.CCR-23-3417. PMID: 38922338.
39.) Rosenbaum SR, Hughes CJ, Fields KM, Purdy SC, Gustafson A, Wolin A, Hampton D, Turner N, Ebmeier C, Costello JC, Ford HL (2024 Aug 3). An EYA3/NF-κB/CCL2 signaling axis suppresses cytotoxic NK cells in the pre-metastatic niche to promote triple negative breast cancer metastasis. bioRxiv : the preprint server for biology, (), . . PMID: 39211066.
40.) Iwanaga R, Yamamoto TM, Gomez K, Nguyen LL, Woodruff ER, Post MD, Mikeska RG, Danis E, Danhorn T, Boorgula MP, Mitra SS, Marjon NA, Bitler BG, Brubaker LW (2024 Aug 1). Tumor-Intrinsic Activity of Chromobox 2 Remodels the Tumor Microenvironment in High-grade Serous Carcinoma. Cancer research communications, 4(8), 1919-1932. . PMID: 38984891.
41.) Kurche JS, Cool CD, Blumhagen RZ, Dobrinskikh E, Heinz D, Herrera JA, Yang IV, Schwartz DA (2024 Jun 26). MUC5B Idiopathic Pulmonary Fibrosis Risk Variant Promotes a Mucosecretory Phenotype and Loss of Small Airway Secretory Cells American Journal of Respiratory and Critical Care Medicine, 210(4), 517-521. . PMCID: 11351810.
42.) Wu MH, Valenca-Pereira F, Cendali F, Giddings EL, Pham-Danis C, Yarnell MC, Novak AJ, Brunetti TM, Thompson SB, Henao-Mejia J, Flavell RA, D’Alessandro A, Kohler ME, Rincon M (2024 May 24). Deleting the mitochondrial respiration negative regulator MCJ enhances the efficacy of CD8+ T cell adoptive therapies in pre-clinical studies Nature Communications, 15(), 4444. . PMCID: 11126743.
43.) Nguyen LL, Watson ZL, Ortega R, Woodruff ER, Jordan KR, Iwanaga R, Yamamoto TM, Bailey CA, To F, Jeong AD, Guntupalli SR, Behbakht K, Gibaja V, Arnoult N, Cocozaki A, Chuong EB, Bitler BG (2024 May 8). Combining EHMT and PARP Inhibition: A Strategy to Diminish Therapy-Resistant Ovarian Cancer Tumor Growth while Stimulating Immune Activation Molecular cancer therapeutics, 23(9), 1332–1347. . PMCID: 11543919.
44.) Davis SL, Messersmith WA, Purcell WT, Lam ET, Corr BR, Leal AD, Lieu CH, O’Bryant CL, Smoots SG, Dus ED, Jordan KR, Serkova NJ, Pitts TM, Diamond JR (2024 Apr 10). A Phase Ib Expansion Cohort Evaluating Aurora A Kinase Inhibitor Alisertib and Dual TORC1/2 Inhibitor Sapanisertib in Patients with Advanced Solid Tumors Cancers, 16(8), 1456. . PMCID: 11048245.
45.) Crump LS, Floyd JL, Kuo LW, Post MD, Bickerdike M, O'Neill K, Sompel K, Jordan KR, Corr BR, Marjon N, Woodruff ER, Richer JK, Bitler BG (2024 Mar 18). Targeting Tryptophan Catabolism in Ovarian Cancer to Attenuate Macrophage Infiltration and PD-L1 Expression. Cancer research communications, 4(3), 822-833. . PMID: 38451784.
46.) Baxter RM, Cabrera-Martinez B, Ghosh T, Rester C, Moreno MG, Borko TL, Selva S, Fleischer CL, Haakonsen N, Mayher A, Bowhay E, Evans C, Miller TM, Huey L, McWilliams J, van Bokhoven A, Deane KD, Knight V, Jordan KR, Ghosh D, Klarquist J, Kedl RM, Piquet AL, Hsieh EW (2024 Mar 14). SARS-CoV-2 Vaccine-Elicited Immunity after B Cell Depletion in Multiple Sclerosis ImmunoHorizons, 8(3), 254-268. . PMCID: 10985059.
47.) Van Kleunen L, Ahmadian M, Post MD, Wolsky RJ, Rickert C, Jordan K, Hu J, Richer JK, Marjon NA, Behbakht K, Sikora MJ, Bitler BG, Clauset A (2024 Jan 29). The spatial structure of the tumor immune microenvironment can explain and predict patient response in high-grade serous carcinoma bioRxiv, (), 2024.01.26.577350. . PMCID: 10862769.
48.) Lui VG, Hoenig M, Cabrera-Martinez B, Baxter RM, Garcia-Perez JE, Bailey O, Acharya A, Lundquist K, Capera J, Matusewicz P, Hartl FA, D'Abramo M, Alba J, Jacobsen EM, Niewolik D, Lorenz M, Pannicke U, Schulz AS, Debatin KM, Schamel WW, Minguet S, Gumbart JC, Dustin ML, Cambier JC, Schwarz K, Hsieh EWY (2024 Jan 1). A partial human LCK defect causes a T cell immunodeficiency with intestinal inflammation. The Journal of experimental medicine, 221(1), . . PMID: 37962568.
49.) Krisanits BA, Schuster R, Randise J, Nogueira LM, Lane JT, Panguluri GA, Li H, Helke K, Cuitiño MC, Koivisto C, Spruill L, Ostrowski MC, Anderson SM, Turner DP, Findlay VJ (2023 Oct 6). Pubertal exposure to dietary advanced glycation end products disrupts ductal morphogenesis and induces atypical hyperplasia in the mammary gland Breast Cancer Research : BCR, 25(), 118. . PMCID: 10559657.
50.) Nguyen KA, DePledge LN, Bian L, Ke Y, Samedi V, Berning AA, Owens P, Wang XJ, Young CD (2023 Sep 21). Polymorphonuclear myeloid-derived suppressor cells and phosphatidylinositol-3 kinase gamma are critical to tobacco-mimicking oral carcinogenesis in mice Journal for Immunotherapy of Cancer, 11(9), e007110. . PMCID: 10514604.
51.) Ahmadian M, Rickert C, Minic A, Wrobel J, Bitler BG, Xing F, Angelo M, Hsieh EWY, Ghosh D, Jordan KR (2023 Sep). A platform-independent framework for phenotyping of multiplex tissue imaging data. PLoS computational biology, 19(9), e1011432. . PMID: 37733781.
52.) Griesinger AM, Riemondy K, Eswaran N, Donson AM, Willard N, Prince EW, Paine SM, Bowes G, Rheaume J, Chapman RJ, Ramage J, Jackson A, Grundy RG, Foreman NK, Ritzmann TA (2023 Aug 9). Multi-omic approach identifies hypoxic tumor-associated myeloid cells that drive immunobiology of high-risk pediatric ependymoma iScience, 26(9), 107585. . PMCID: 10484966.
53.) Corr BR, Moroney MR, Woodruff E, Watson ZL, Jordan KR, Danhorn T, Bailey C, Wolsky RJ, Bitler BG (2023 Apr 6). Combination CDC-like kinase inhibition (CLK)/Dual-specificity tyrosine-regulated kinase (DYRK) and taxane therapy in CTNNB1-mutated endometrial cancer bioRxiv, (), 2023.04.04.535570. . PMCID: 10104048.
54.) Corr BR, Moroney MR, Woodruff E, Watson ZL, Jordan KR, Danhorn T, Bailey C, Wolsky RJ, Bitler BG (2023 Apr 6). Combination CDC-like kinase inhibition (CLK)/Dual-specificity tyrosine-regulated kinase (DYRK) and taxane therapy in CTNNB1 -mutated endometrial cancer. bioRxiv : the preprint server for biology, (), . . PMID: 37066339.
55.) Nguyen LL, Watson ZL, Ortega R, Woodruff ER, Jordan KR, Iwanaga R, Yamamoto TM, Bailey CA, Jeong AD, Guntupalli SR, Behbakht K, Gbaja V, Arnoult N, Chuong EB, Bitler BG (2023 Feb 23). Combinatory EHMT and PARP inhibition induces an interferon response and a CD8 T cell-dependent tumor regression in PARP inhibitor-resistant models bioRxiv, (), 2023.02.23.529773. . PMCID: 9980116.
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