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All Facilities >> American Type Culture Collection >> ATCC Sequencing & Bioinformatics Center (Genomics / Genome Analysis and Technologies)
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Jonathan Jacobs
Last Updated: 01/30/2024
We are the core genomics and bioinformatics group at the American Type Culture Collection (ATCC). We offer whole genome sequencing and advanced bioinformatics analysis for a wide range of biological materials - ranging from viruses and bacteria, to fungi and human or animal cell lines. In addition to extensive sequencing capabilities, we also offer genome assembly, verified annotation, functional genomics analysis, transcriptomics analysis, cell line contamination assessments, microbiome profiling, and advanced cell line authentication services.
Services are offerred outside of American Type Culture Collection
Consulting is offerred outside of American Type Culture Collection
Computational - Bioinformatics
Computational - High Performance Computing
Data Analysis And Interpretation
Data Processing And Interpretation
Genome/Transcriptome Assembly And Annotation
Quantitative DNA Sequence Mapping
Sequencing - Capillary Sequencing
Agilent 2100 Bioanalyzer Instrument
This Bioanalyzer Instrument is used for sample quality control of biomolecules. [Product Link]
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Agilent 4200 Tapestation Genetic Analyzer
An automated electrophoresis tool for DNA and RNA sample quality control. Fully automated sample processing ffor samples 1 to 96. [Product Link]
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Beckman-Coulter ViCell Vicell
Cell counter that provides an automatic means to perform the Trypan Blue Dye Exclusion method, allowing users to load up to 9 samples at once for easy and automated cell analysis, and offers pre-programmed and customizable analysis options for consistent and accurate analysis. [Product Link]
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Eppendorf 5075 epMotion Automated Liquid Handling System
System provides precise, accurate alternative to time-consuming manual pipetting and liquid handling tasks. The combination of accelerated operational speed, new software & hardware features and an increased number of worktable positions make the systems best for and flexible laboratory use across a wide range of liquid handling applications. To ensure easy and consistent use, epMotion 5075 employs both Eppendorf's established epBlue software and an new software assistant concept. This supports the programming of applications and ensures that all users can use the system with only initial training. In addition, novel features such as a new CleanCap option, including UV light decontamination and a HEPA filter for purified air, offer new standards of decontamination and sample safety. This is supported even further by an optical sensor that checks labware, liquid levels and tip counts and type at the start of each cycle, hugely decreasing any risk of error during the run. [Product Link]
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Illumina iSeq 100 Sequencing System
Makes next generation sequencing easier. Designed for simplicity, it allows labs of all sizes to sequence DNA and RNA at push of button. [Product Link]
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Illumina MiSeq System
Access focused applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling, and more. MiSeq reagents enable up to 15 Gb of output with 25 million sequencing reads and 2 × 300 bp read lengths. [Product Link]
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Illumina NextSeq 1000 and NextSeq 2000 Sequencing Systems
Benchtop sequencers that allow you to explore new science across variety of current and emerging applications, with higher efficiency and fewer restraints. [Product Link]
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Nanodrop Qubit 3 Fluorometer
Benchtop fluorometer that can be used for the quantitation of DNA, RNA, microRNA, and protein using the highly sensitive and accurate fluorescence-based Qubit quantitation assays. Additionally, Ion Sphere Particle quality can be evaluated on the Qubit 3.0 Fluorometer using the Ion Sphere Quality Control Kit prior to performing a sequencing run on the Ion Personal Genome Machine (PGM) Sequencer. You can also use the Qubit 3.0 Fluorometer to directly measure the fluorescence of samples or to create new assay(s) using the MyQubit software pre-programmed into the instrument. [Product Link]
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Oxford Nanopore Technologies GridION x5
Oxford Nanopore Technologies MinION
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https://coremarketplace.org/?FacilityID=1195Institution
Institution ROR ID: https://ror.org/03thhhv76Keywords:
USEDit, ABRF, ATTC, whole genome sequencing, advanced bioinformatics analysis
Resource Type:
access service resource, core facility, service resource
Citation:
American Type Culture Collection Sequencing and Bioinformatics Center Core Facility (RRID:SCR_021346)
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Facility Details
About This Facility
Services and Equipment
Publications
Awards & Associations
Metadata
Other Facilities at this Institution:
