Stanford Medicine
John Coller
269 Campus Dr
CCSR 0120
Stanford, CA 94305-5177
https://med.stanford.edu/sfgf.html
RRID: RRID:SCR_002050
Assays and Measurements
Computational - Bioinformatics
Copy Number Variation (CNV)
Cytogenetics
Data Analysis
DNA Analysis
Genomics
Genotyping
Library Services
Microarray
Molecular Library Services
Nucleic Acid Extraction
Optical Imaging
PCR Arrays
Phosphor Imaging
Proteomics
Real-time qPCR
RNA analysis
RNA Integrity
Sequencing - Capillary Sequencing
Sequencing - DNA Sequencing
Sequencing - Next Generation Sequencing (NGS)
Shared Instrumentation Oversight & Maintenance
Western Blot
1.) Pham THM, Xue Y, Brewer SM, Bernstein KE, Quake SR, Monack DM (2023 Jan 6). Single-cell profiling identifies ACE(+) granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection. Science advances, 9(1), eadd4333. . PMID: 36608122.
2.) Hu J, Boeri M, Sozzi G, Liu D, Marchianò A, Roz L, Pelosi G, Gatter K, Pastorino U, Pezzella F (2015 Aug). Gene Signatures Stratify Computed Tomography Screening Detected Lung Cancer in High-Risk Populations. EBioMedicine, 2(8), 831-40. . PMID: 26425689.
3.) Xie H, Zhao Y, Caramuta S, Larsson C, Lui WO (2012). miR-205 expression promotes cell proliferation and migration of human cervical cancer cells. PloS one, 7(10), e46990. . PMID: 23056551.
4.) Liu D, Hu J, Agorreta J, Cesario A, Zhang Y, Harris AL, Gatter K, Pezzella F (2010 Oct 28). Tumor necrosis factor receptor-associated protein 1(TRAP1) regulates genes involved in cell cycle and metastases. Cancer letters, 296(2), 194-205. doi: 10.1016/j.canlet.2010.04.017. PMID: 20471161.
5.) Granjon A, Gustin MP, Rieusset J, Lefai E, Meugnier E, Güller I, Cerutti C, Paultre C, Disse E, Rabasa-Lhoret R, Laville M, Vidal H, Rome S (2009 Nov). The microRNA signature in response to insulin reveals its implication in the transcriptional action of insulin in human skeletal muscle and the role of a sterol regulatory element-binding protein-1c/myocyte enhancer factor 2C pathway. Diabetes, 58(11), 2555-64. . PMID: 19720801.
6.) van Baarsen LG, Vosslamber S, Tijssen M, Baggen JM, van der Voort LF, Killestein J, van der Pouw Kraan TC, Polman CH, Verweij CL (2008 Apr 2). Pharmacogenomics of interferon-beta therapy in multiple sclerosis: baseline IFN signature determines pharmacological differences between patients. PloS one, 3(4), e1927. . PMID: 18382694.
7.) Higgins JP, Kaygusuz G, Wang L, Montgomery K, Mason V, Zhu SX, Marinelli RJ, Presti JC Jr, van de Rijn M, Brooks JD (2007 May). Placental S100 (S100P) and GATA3: markers for transitional epithelium and urothelial carcinoma discovered by complementary DNA microarray. The American journal of surgical pathology, 31(5), 673-80. . PMID: 17460449.
8.) Chan DA, Krieg AJ, Turcotte S, Giaccia AJ (2007). HIF gene expression in cancer therapy. Methods in enzymology, 435(), 323-45. . PMID: 17998061.
9.) Ekelund E, Saaf A, Tengvall-Linder M, Melen E, Link J, Barker J, Reynolds NJ, Meggitt SJ, Kere J, Wahlgren CF, Pershagen G, Wickman M, Nordenskjold M, Kockum I, Bradley M (2006 Jun). Elevated expression and genetic association links the SOCS3 gene to atopic dermatitis. American journal of human genetics, 78(6), 1060-5. . PMID: 16685656.
The Stanford Functional Genomics Facility (SFGF) provides high-throughput sequencing (Illumina HiSeq 4000, NextSeq 500, MiSeq and MiniSeq), microarray gene expression and genotyping services (Affymetrix, Agilent and Illumina) to the Stanford research community and outside institutions. The facility also provides 24/7 access to instruments, equipment and software utilized within the genomics field.
