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Robert P. Apkarian Integrated Electron Microscopy Core (IEMC)

Emory University

Contact Info:

Ricardo Guerrero-Ferreira

Emerson Site, Cherry L. Emerson Hall, Suite E106, 1521 Dickey Drive NE

BioConnector Site, Biochemistry Connector, Suite G236, 1510 Clifton Rd.

Atlanta, GA 30322

https://www.cores.emory.edu/iemc/

Grants and Identifiers:

RRID: RRID:SCR_023537

Other Citation Identifiers

1S10RR025679-01

0923395

5UL1TR000454-09

1S10OD034303-01

Instrumentation:

(Equipment No Longer Active At this Facility)

FEI Talos Arctica Cryo-TEM

Transmission electron microscope that is built for delivering high-resolution 3D characterization of biological samples and biomaterials in cell biology, structural biology, and nanotechnology research. [Product Link]

RRID:SCR_019905

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(Equipment No Longer Active At this Facility)

Hitachi HT7700 Transmission Electron Microscope

HT7700 Transmission Electron Microscope with Dual-Mode objective lens features superior high-contrast and high-resolution performance together with analytical capabilities for biological and materials science. Digital design and sophisticated automation increase throughput for both novice and advanced users. Maximize contrast by lowering the high voltage through the 120-40 kV range and continue operation seamlessly. Configure the HT7700 to meet all of your advanced sample analysis needs, with customization options for BF-/DF-STEM, EDX, in-situ, cryo-microscopy, and electron tomography. [Product Link]

RRID:SCR_020022

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Hitachi HT7700 120 kV TEM

The Hitachi HT7700 TEM has a Tungsten filament and it is used for imaging biological and materials samples. It is equipped with an AMT CCD camera. This instrument is capable of tilt imaging with a motorized goniometer which allows +/- 70° sample tilting.

Citation IDs: Georgia Clinical and Translational Science Alliance under award number UL1TR002378

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JEOL JEM-1400 Transmission Electron Microscope

The JEOL JEM-1400 120 kV LaB6TEM is equipped with a Gatan, 2k x 2k, CCD camera. There are two Gatan 626 cryo holders available for acquisition of cryo-TEM data. The JEOL JEM-1400 is capable of several modes of TEM, including tomography of sectioned materials, cryo-TEM, and room temperature TEM. Semi-automated data acquisition using Serial EM is available for testing cryo-TEM grids, and a Minimum Dose System (MDS) funtion allows for imaging of beam-sensitive samples. The beam blocker allows for electron diffraction experiments.

Citation IDs: National Institutes of Health Grant S10 RR025679

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JEOL JEM-2200FS 200 kV TEM

The JEOL JEM-2200FS 200kV Field Emission TEM has two direct electron detectors, a Direct Electron DE-20 and a Gatan K2. Images can be acquired with improved contrast by the use of Zernike or hole-free phase plates. An in-column energy filter (Omega filter) is specially important for high-resolution cryo-electron tomography and cryo-electron microscopy of thick samples. SerialEM software is available for semi-automated acquisition of cryo-EM, cryo-ET, and microcrystal electron difraction data. Two Gatan 914 cryo holders are available for tilt series acquisition and imaging of cryo-TEM specimens.

Citation IDs: National Science Foundation Major Research Instrumentation Grant 0923395

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JEOL JSM-IT700HR SEM

The JEOL JSM-IT700HR is an analytical, high-resolution, field emission scanning electron microscope (SEM) capable of imaging under high and low vacuum conditions. It is used for imaging biological samples and materials. A specialized MP-94370LSED Low Vacuum Secondary Electron Detector allows acquisition of structural data for soft, uncoated, hydrated samples. It is equipped with both a secondary electron detector and a high-sensitivity, multi-segment, solid-state backscattered electron detector. This instrument features a large analytical chamber and a fully embedded JEOL JED-2300 energy-dispersive micro-analysis system (EDS) with a silicon drift detector (SDD).

Leica DM6 FS cryo-CLEM fluorescence microscope

The Leica Cryo-CLEM system for Correlated Light and Electron Microscopy (CLEM) is a cryo fluorescence microscope which allows the observation of frozen-hydrated samples from viruses to cells on cryo-electron microscopy (cryo-TEM) grids. Data acquisition on this instrument permits mapping of cryo-EM grids and transferring of coordinates to a transmission electron microscope for further, high-resolution, data collection with an automated system such as Serial EM.

ThermoFisher Hydra Bio Plasma FIB-SEM

Thermo Scientific Hydra Bio Plasma Focused Ion Beam-Scanning Electron Microscope with a Delmic METEOR integrated Fluorescent Light Microscope (iFLM) for Correlated Light and Electron Microscopy. This instrument is equipped with 4 ion sources (Xenon, Argon, Oxygen, and Nitrogen) to allow for multiple FIB-SEM applications on biological samples and materials. Spin-Mill capabilities increases throughput in room temperature volume EM by acquiring data in multiple regions of interest within a single sample. Cryo applications convert this instrument in a sample prepartion tool for lamella milling, as well as a data acquisition tool for cryo volume EM.

Citation IDs: National Institutes of Health Grant S10 1S10OD034303-01

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ThermoFisher Talos Arctica 200 kv TEM

The ThermoFisher Talos Arctica Field Emission TEM has a BioQuantum Gatan K3 direct electron detector. Images are acquired using a Gatan Image Filter system (GIF) which is especially useful for high-resolution cryo-electron tomography, cryo-electron microscopy of thick samples, and to improve contrast on cryo-electron microscopy specimens. This instrument is equipped with an autoloader system, capable of loading 12 samples at a time, which can be maintained under liquid nitrogen temperatures for easy sample exchanges. Single particle data and tilt series acquisition are done using Serial EM. The ThermoFisher EPU software can also be used for the automated acquisition of single-particle cryo-EM data.

(Equipment No Longer Active At this Facility)

ThermoFisher Talos Arctica Cryo-Transmission Electron Microscope

Autoloader system for cryo-EM single particle and tomography data acquisition

ThermoFisher Talos L120C TEM and STEM

Transmission electron microscope for conventional and cryo-EM

Services Provided:

Cell Imaging

Computational - High Performance Computing

Correlative Light Electron Microscopy

Cryo Light Microscopy

Cryo-Electron Microscopy

Cryo-Electron Microscopy Of Vitrified Sections (CEMOVIS)

Cryo-Electron Tomography

Cryo-Scanning Electron Microscopy

Cryo-Ultra Microtomy

Electron Microscopy

Focused Ion Beam (FIB)

Freeze Substitution

High-Pressure Freezing

Histology

Immuno Electron Microscopy

Immunofluorescence

Immunohistochemistry

Microscopy

Microstructure Characterization

Microtomy/Electron

Microtomy/Light

Natural Product Analysis

Negative Staining For TEM

Scanning Electron Microscopy

Sputter Coating

Tissue Embed

Transmission Electron Microscopy

Relevant Publications:

1.) Nandi S, Dey D, Srinivas P, Dunham CM, Conn GL (2025 Jul 8). Distant ribose 2′-O-methylation of 23S rRNA helix 69 pre-orders the capreomycin drug binding pocket at the ribosome subunit interface Nucleic Acids Research, 53(13), gkaf618. . PMCID: 12235517.


2.) Yang Z, Ghorai N, Wu S, He S, Lian T (2025 Jan 14). Direct and Indirect Interfacial Electron Transfer at a Plasmonic p-Cu(7)S(4)/CdS Heterojunction. ACS nano, 19(1), 1547-1556. . PMID: 39743773.


3.) Mazeaud C, Pfister S, Owen JE, Pereira HS, Charbonneau F, Robinson ZE, Anton A, Bemis CL, Sow AA, Patel TR, Neufeldt CJ, Scaturro P, Chatel-Chaix L (2024 Nov 20). Zika virus remodels and hijacks IGF2BP2 ribonucleoprotein complex to promote viral replication organelle biogenesis. eLife, 13(), . . PMID: 39565347.


4.) Kshirsagar SM, Shrestha N, Kipping T, Banga AK (2024 Jul). Formulation development of tazarotene-loaded PLGA nanoparticles for follicular delivery in the treatment of inflammatory skin diseases. European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V, 200(), 114346. doi: 10.1016/j.ejpb.2024.114346. PMID: 38823541.


5.) Kshirsagar SM, Viswaroopan N, Ghosh M, Junaid MSA, Haque S, Khan J, Muzaffar S, Srivastava RK, Athar M, Banga AK (2024 May 27). Development of 4-phenylbutyric acid microsponge gel formulations for the treatment of lewisite-mediated skin injury. Drug delivery and translational research, (), . . PMID: 38802678.


6.) Knippler CM, Arnst JL, Robinson IE, Matsuk V, Khatib TO, Harvey RD, Shanmugam M, Mouw JK, Fu H, Ganesh T, Marcus AI (2024 Mar 27). Bisbiguanide analogs induce mitochondrial stress to inhibit lung cancer cell invasion iScience, 27(4), 109591. . PMCID: 11022046.


7.) McFadden WM, Casey-Moore MC, Bare GAL, Kirby KA, Wen X, Li G, Wang H, Slack RL, Snyder AA, Lorson ZC, Kaufman IL, Cilento ME, Tedbury PR, Gembicky M, Olson AJ, Torbett BE, Sharpless KB, Sarafianos SG (2024 Mar 21). Identification of clickable HIV-1 capsid-targeting probes for viral replication inhibition. Cell chemical biology, 31(3), 477-486.e7. . PMID: 38518746.


8.) Radmard A, Banga AK (2024 Feb 22). Microneedle-Assisted Transdermal Delivery of Lurasidone Nanoparticles. Pharmaceutics, 16(3), . . PMID: 38543202.


9.) Arnst J, Jing Z, Cohen C, Ha SW, Viggeswarapu M, Beck GR Jr (2023 Oct). Bioactive silica nanoparticles target autophagy, NF-κB, and MAPK pathways to inhibit osteoclastogenesis. Biomaterials, 301(), 122238. doi: 10.1016/j.biomaterials.2023.122238. ID: 37441901.


10.) Kelvin JM, Jain J, Thapa A, Qui M, Birnbaum LA, Moore SG, Zecca H, Summers RJ, Switchenko JM, Costanza E, Uricoli B, Wang X, Jui NT, Fu H, Du Y, DeRyckere D, Graham DK, Dreaden EC (2023 Sep 13). Constitutively Synergistic Multiagent Drug Formulations Targeting MERTK, FLT3, and BCL-2 for Treatment of AML. Pharmaceutical research, (), . doi: 10.1007/s11095-023-03596-9. ID: 37704893.


11.) Patel A, Kumar S, Lai L, Keen M, Valanparambil R, Chakravarthy C, Laughlin Z, Frank F, Cheedarla N, Verkerke HP, Neish AS, Roback JD, Davis CW, Wrammert J, Sharma A, Ahmed R, Suthar MS, Murali-Krishna K, Chandele A, Ortlund E (2023 Sep 13). Light chain of a public SARS-CoV-2 class-3 antibody modulates neutralization against Omicron. Cell reports, 42(9), 113150. doi: 10.1016/j.celrep.2023.113150. ID: 37708028.


12.) Ramey-Ward AN, Dong Y, Yang J, Ogasawara H, Bremer-Sai EC, Brazhkina O, Franck C, Davis M, Salaita K (2023 Sep 11). Optomechanically Actuated Hydrogel Platform for Cell Stimulation with Spatial and Temporal Resolution. ACS biomaterials science & engineering, 9(9), 5361-5375. . ID: 37604774.


13.) Kelvin JM, Chimenti ML, Zhang DY, Williams EK, Moore SG, Humber GM, Baxter TA, Birnbaum LA, Qui M, Zecca H, Thapa A, Jain J, Jui NT, Wang X, Fu H, Du Y, Kemp ML, Lam WA, Graham DK, DeRyckere D, Dreaden EC (2023 Sep). Development of constitutively synergistic nanoformulations to enhance chemosensitivity in T-cell leukemia. Journal of controlled release : official journal of the Controlled Release Society, 361(), 470-482. doi: 10.1016/j.jconrel.2023.07.045. ID: 37543290.


14.) Zhao AX, Zhu YI, Chung E, Lee J, Morais S, Yoon H, Emelianov S (2023 Aug 2). Factors Influencing the Repeated Transient Optical Droplet Vaporization Threshold and Lifetimes of Phase Change, Perfluorocarbon Nanodroplets. Nanomaterials (Basel, Switzerland), 13(15), . . ID: 37570555.


15.) He X, Jarrell ZR, Smith MR, Ly VT, Hu X, Sueblinvong V, Liang Y, Orr M, Go YM, Jones DP (2023 Aug 1). Low-dose vanadium pentoxide perturbed lung metabolism associated with inflammation and fibrosis signaling in male animal and in vitro models. American journal of physiology. Lung cellular and molecular physiology, 325(2), L215-L232. . ID: 37310758.


16.) Santiago JV, Natu A, Ramelow CC, Rayaprolu S, Xiao H, Kumar V, Seyfried NT, Rangaraju S (2023 Jul 29). Identification of state-specific proteomic and transcriptomic signatures of microglia-derived extracellular vesicles. bioRxiv : the preprint server for biology, (), . . ID: 37546899.


17.) Beckwith SL, Nomberg EJ, Newman AC, Taylor JV, Guerrero-Ferreira RC, Garfinkel DJ (2023 Jul 25). An interchangeable prion-like domain is required for Ty1 retrotransposition. Proceedings of the National Academy of Sciences of the United States of America, 120(30), e2303358120. . ID: 37459521.


18.) Patel A, Kumar S, Lai L, Chakravarthy C, Valanparambil R, Reddy ES, Gottimukkala K, Bajpai P, Raju DR, Edara VV, Davis-Gardner ME, Linderman S, Dixit K, Sharma P, Mantus G, Cheedarla N, Verkerke HP, Frank F, Neish AS, Roback JD, Davis CW, Wrammert J, Ahmed R, Suthar MS, Sharma A, Murali-Krishna K, Chandele A, Ortlund EA (2023 Jul 6). Molecular basis of SARS-CoV-2 Omicron variant evasion from shared neutralizing antibody response. Structure (London, England : 1993), 31(7), 801-811.e5. . ID: 37167972.


19.) Srinivas P, Nosrati M, Zelinskaya N, Dey D, Comstock LR, Dunham CM, Conn GL (2023 Jun 20). 30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC. Proceedings of the National Academy of Sciences of the United States of America, 120(25), e2304128120. . ID: 37307464.


20.) Ohanele C, Peoples JN, Karlstaedt A, Geiger JT, Gayle AD, Ghazal N, Sohani F, Brown ME, Davis ME, Porter GA, Faundez V, Kwong JQ (2023 May 22). Mitochondrial citrate carrier SLC25A1 is a dosage-dependent regulator of metabolic reprogramming and morphogenesis in the developing heart. bioRxiv : the preprint server for biology, (), . . ID: 37292906.


21.) Salazar-Noratto GE, Nations CC, Stevens HY, Xu M, Gaynard S, Dooley C, de Nijs N, McDonagh K, Shen S, Willimon SC, Barry F, Guldberg RE (2023 May 15). Patient-Specific iPSC-Derived Models Link Aberrant Endoplasmic Reticulum Stress Sensing and Response to Juvenile Osteochondritis Dissecans Etiology. Stem cells translational medicine, 12(5), 293-306. . ID: 37184892.


22.) Zhang L, Hajebrahimi S, Tong S, Gao X, Cheng H, Zhang Q, Hinojosa DT, Jiang K, Hong L, Huard J, Bao G (2023 May 5). Force-Mediated Endocytosis of Iron Oxide Nanoparticles for Magnetic Targeting of Stem Cells. ACS applied materials & interfaces, (), . doi: 10.1021/acsami.2c20265. ID: 37145890.


23.) Hellen DJ, Bennett A, Malla S, Klindt C, Rao A, Dawson PA, Karpen SJ (2023 Apr 1). Liver-restricted deletion of the biliary atresia candidate gene Pkd1l1 causes bile duct dysmorphogenesis and ciliopathy. Hepatology (Baltimore, Md.), 77(4), 1274-1286. doi: 10.1097/HEP.0000000000000029. ID: 36645229.


24.) Park HJ, Hoffman JR, Brown ME, Bheri S, Brazhkina O, Son YH, Davis ME (2023 Mar 3). Knockdown of deleterious miRNA in progenitor cell-derived small extracellular vesicles enhances tissue repair in myocardial infarction. Science advances, 9(9), eabo4616. . ID: 36867699.


25.) Rotolo L, Vanover D, Bruno NC, Peck HE, Zurla C, Murray J, Noel RK, O (2023 Mar). Species-agnostic polymeric formulations for inhalable messenger RNA delivery to the lung. Nature materials, 22(3), 369-379. doi: 10.1038/s41563-022-01404-0. ID: 36443576.


26.) Gao Y, Raghavan A, Deng B, Lee J, Liang B (2023 Jan 25). Optimal Conditions for In Vitro Assembly of Respiratory Syncytial Virus Nucleocapsid-like Particles. Viruses, 15(2), . . ID: 36851557.


27.) Xiao X, Robang AS, Sarma S, Le JV, Helmicki ME, Lambert MJ, Guerrero-Ferreira R, Arboleda-Echavarria J, Paravastu AK, Hall CK (2022 Nov). Sequence patterns and signatures: Computational and experimental discovery of amyloid-forming peptides. PNAS nexus, 1(5), pgac263. . ID: 36712347.


28.) Kreutzberger MAB, Wang S, Beltran LC, Tuachi A, Zuo X, Egelman EH, Conticello VP (2022 May 17). Phenol-soluble modulins PSMα3 and PSMβ2 form nanotubes that are cross-α amyloids. Proceedings of the National Academy of Sciences of the United States of America, 119(20), e2121586119. . ID: 35533283.


29.) Srinivas P, Steiner RE, Pavelich IJ, Guerrero-Ferreira R, Juneja P, Ibba M, Dunham CM (2021 Nov 18). Oxidation alters the architecture of the phenylalanyl-tRNA synthetase editing domain to confer hyperaccuracy. Nucleic acids research, 49(20), 11800-11809. . ID: 34581811.


30.) Wang F, Gnewou O, Wang S, Osinski T, Zuo X, Egelman EH, Conticello VP (2021 Oct 6). Deterministic chaos in the self-assembly of β sheet nanotubes from an amphipathic oligopeptide. Matter, 4(10), 3217-3231. . ID: 34632372.


31.) Martin MD, Huard DJE, Guerrero-Ferreira RC, Desai IM, Barlow BM, Lieberman RL (2021 Oct). Molecular architecture and modifications of full-length myocilin. Experimental eye research, 211(), 108729. . ID: 34400147.


32.) Cho J, Kim S, Lee H, Rah W, Cho HC, Kim NK, Bae S, Shin DH, Lee MG, Park IH, Tanaka Y, Shin E, Yi H, Han JW, Hwang PTJ, Jun HW, Park HJ, Cho K, Lee SW, Jung JK, Levit RD, Sussman MA, Harvey RP, Yoon YS (2021 Aug). Regeneration of infarcted mouse hearts by cardiovascular tissue formed via the direct reprogramming of mouse fibroblasts. Nature biomedical engineering, 5(8), 880-896. . ID: 34426676.


33.) Wang F, Gnewou O, Modlin C, Beltran LC, Xu C, Su Z, Juneja P, Grigoryan G, Egelman EH, Conticello VP (2021 Jan 18). Structural analysis of cross α-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials. Nature communications, 12(1), 407. . ID: 33462223.


34.) Merg AD, Touponse G, Genderen EV, Blum TB, Zuo X, Bazrafshan A, Siaw HMH, McCanna A, Brian Dyer R, Salaita K, Abrahams JP, Conticello VP (2020 Nov 25). Shape-Shifting Peptide Nanomaterials: Surface Asymmetry Enables pH-Dependent Formation and Interconversion of Collagen Tubes and Sheets. Journal of the American Chemical Society, 142(47), 19956-19968. doi: 10.1021/jacs.0c08174. ID: 33170675.


35.) Tillman MC, Imai N, Li Y, Khadka M, Okafor CD, Juneja P, Adhiyaman A, Hagen SJ, Cohen DE, Ortlund EA (2020 Sep 8). Allosteric regulation of thioesterase superfamily member 1 by lipid sensor domain binding fatty acids and lysophosphatidylcholine. Proceedings of the National Academy of Sciences of the United States of America, 117(36), 22080-22089. . ID: 32820071.


36.) Cao D, Gao Y, Roesler C, Rice S, D (2020 Jan 17). Cryo-EM structure of the respiratory syncytial virus RNA polymerase. Nature communications, 11(1), 368. . ID: 31953395.


37.) Xu Y, Wu H, Xiong Q, Ji B, Yi H, Duan H, Mao H (2019 Aug 19). Size-Controllable Magnetic Iron Oxide Nanorods for Biomarker Targeting and Improving Microfluidic Mixing. ACS applied bio materials, 2(8), 3362-3371. doi: 10.1021/acsabm.9b00359. ID: 35030778.


38.) Ke Z, Dillard RS, Chirkova T, Leon F, Stobart CC, Hampton CM, Strauss JD, Rajan D, Rostad CA, Taylor JV, Yi H, Shah R, Jin M, Hartert TV, Peebles RS Jr, Graham BS, Moore ML, Anderson LJ, Wright ER (2018 Aug 20). The Morphology and Assembly of Respiratory Syncytial Virus Revealed by Cryo-Electron Tomography. Viruses, 10(8), . . ID: 30127286.


39.) Abreu-Velez AM, Howard MS, Yi H, Florez-Vargas AA (2018 Aug). Patients affected by a new variant of endemic pemphigus foliaceus have autoantibodies colocalizing with MYZAP, p0071, desmoplakins 1-2 and ARVCF, causing renal damage. Clinical and experimental dermatology, 43(6), 692-702. doi: 10.1111/ced.13566. ID: 29768670.


40.) Ke Z, Strauss JD, Hampton CM, Brindley MA, Dillard RS, Leon F, Lamb KM, Plemper RK, Wright ER (2018 Apr 30). Promotion of virus assembly and organization by the measles virus matrix protein. Nature communications, 9(1), 1736. . ID: 29712906.


41.) Abreu-Velez AM, Yi H, Howard MS (2017 Oct). Cell junction protein armadillo repeat gene deleted in velo-cardio-facial syndrome is expressed in the skin and colocalizes with autoantibodies of patients affected by a new variant of endemic pemphigus foliaceus in Colombia. Dermatology practical & conceptual, 7(4), 3-8. . ID: 29214101.


Description:

The Robert P. Apkarian Integrated Electron Microscopy Core, one of the Emory Integrated Core Facilities (EICF), is supported by the National Institutes of Health, the National Science Foundation, the Georgia Clinical and Translational Science Alliance and the Emory University School of Medicine. We help investigators use the latest technologies on structural research in their projects. Please contact us so that we can discuss your experimental needs.