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All Facilities >> University of Missouri >> DNA Core Facility (Genomics / Genome Analysis and Technologies)

DNA Core Facility (Genomics / Genome Analysis and Technologies)

Facility Details

About This Facility

Services and Equipment

Publications

Associations

Metadata

University of Missouri

Bond Life Science Center, room 216

1201 Rollins Street

Columbia, MO 65211

United States

https://dnacore.missouri.edu/

Quicklinks:

https://coremarketplace.org/RRID:SCR_017778

Primary Contact:

Nathan Bivens

Last Updated: 07/06/2020

Facility RRID

RRID:SCR_017778

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Facility Details

The DNA Core Facility (DNACF) provides genomic services to investigators throughout the University of Missouri system, other academic institutions and commercial entities.

Sanger Sequencing: 3730xl 96-capillary DNA Analyzer

Metagenomic/16S Sequencing Services: metagenomic, metatranscriptomic, and target amplicon approaches

NGS Services: Full library construction services (amplicons, small RNA analysis, transcriptome profiling, genomic and whole genome bisulfite sequencing); NovaSeq, NextSeq 500 and MiSeq instruments

Facility Policies

Services are offerred outside of University of Missouri

Consulting is not offerred outside of University of Missouri

(To see more facility information, click the in the upper right)

Services offered:

Library Services

Sequencing - Capillary Sequencing

Sequencing - DNA Sequencing

Sequencing - Next Generation Sequencing (NGS)

Facility Equipment

NovaSeq
NextSeq 500
MiSeq
Chromium System
Applied Biosystems 3730xl
Advanced Analytical Fragment Analyzer
Sciclone G3 NGSx
Tecan Freedom Evo 100
Covaris M220 Sonicator

(To see more facility information, click the in the upper right)

Publications

Publications associated with this facility (Click To View):

1.) Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS (2020 Jul 2). Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. PMID: 32616744.

2.) Shay DA, Welly RJ, Givan SA, Bivens N, Kanaley J, Marshall BL, Lubahn DB, Rosenfeld CS, Vieira-Potter VJ (2020 May). Changes in nucleus accumbens gene expression accompany sex-specific suppression of spontaneous physical activity in aromatase knockout mice. PMID: 32081742.

3.) Mao J, Jain A, Denslow ND, Nouri MZ, Chen S, Wang T, Zhu N, Koh J, Sarma SJ, Sumner BW, Lei Z, Sumner LW, Bivens NJ, Roberts RM, Tuteja G, Rosenfeld CS (2020 Mar 3). Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. PMID: 32071231.

4.) Ericsson AC, Personett AR, Rindt H, Grobman ME, Reinero CR (2020). Respiratory dysbiosis and population-wide temporal dynamics in canine chronic bronchitis and non-inflammatory respiratory disease. PMID: 31990924.

5.) Marshall BL, Liu Y, Farrington MJ, Mao J, Helferich WG, Schenk AK, Bivens NJ, Sarma SJ, Lei Z, Sumner LW, Joshi T, Rosenfeld CS (2019 Aug). Early genistein exposure of California mice and effects on the gut microbiota-brain axis. PMID: 31189133.

6.) Ortega MT, Bivens NJ, Jogahara T, Kuroiwa A, Givan SA, Rosenfeld CS (2019 Jan 25). Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome. PMID: 30683046.

7.) Vientós-Plotts AI, Ericsson AC, Rindt H, Reinero CR (2019). Respiratory Dysbiosis in Canine Bacterial Pneumonia: Standard Culture vs. Microbiome Sequencing. PMID: 31681810.

8.) Javurek AB, Spollen WG, Johnson SA, Bivens NJ, Bromert KH, Givan SA, Rosenfeld CS (2017 Aug). Consumption of a high-fat diet alters the seminal fluid and gut microbiomes in male mice. PMID: 27569192.

9.) Javurek AB, Suresh D, Spollen WG, Hart ML, Hansen SA, Ellersieck MR, Bivens NJ, Givan SA, Upendran A, Kannan R, Rosenfeld CS (2017 Jun 6). Gut Dysbiosis and Neurobehavioral Alterations in Rats Exposed to Silver Nanoparticles. PMID: 28588204.

10.) Manshack LK, Conard CM, Bryan SJ, Deem SL, Holliday DK, Bivens NJ, Givan SA, Rosenfeld CS (2017 Apr 1). Transcriptomic alterations in the brain of painted turtles (Chrysemys picta) developmentally exposed to bisphenol A or ethinyl estradiol. PMID: 28159858.

11.) Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE (2017 Apr). Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). PMID: 28337070.

12.) Koestel ZL, Backus RC, Tsuruta K, Spollen WG, Johnson SA, Javurek AB, Ellersieck MR, Wiedmeyer CE, Kannan K, Xue J, Bivens NJ, Givan SA, Rosenfeld CS (2017 Feb 1). Bisphenol A (BPA) in the serum of pet dogs following short-term consumption of canned dog food and potential health consequences of exposure to BPA. PMID: 27932218.

13.) Johnson SA, Spollen WG, Manshack LK, Bivens NJ, Givan SA, Rosenfeld CS (2017 Feb). Hypothalamic transcriptomic alterations in male and female California mice (Peromyscus californicus) developmentally exposed to bisphenol A or ethinyl estradiol. PMID: 28196854.

14.) Javurek AB, Spollen WG, Johnson SA, Bivens NJ, Bromert KH, Givan SA, Rosenfeld CS (2016 Nov). Effects of exposure to bisphenol A and ethinyl estradiol on the gut microbiota of parents and their offspring in a rodent model. PMID: 27624382.

15.) Bivens NJ, Zhou M (2016 May). RNA-Seq Library Construction Methods for Transcriptome Analysis. PMID: 31725988.

16.) Javurek AB, Spollen WG, Ali AM, Johnson SA, Lubahn DB, Bivens NJ, Bromert KH, Ellersieck MR, Givan SA, Rosenfeld CS (2016 Mar 14). Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status. PMID: 26971397.

17.) Givan SA, Zhou MY, Bromert K, Bivens N, Chapman LF (2015 May 7). Genome Sequences of Pseudoalteromonas Strains ATCC BAA-314, ATCC 70018, and ATCC 70019. PMID: 25953181.

18.) Shanker S, Paulson A, Edenberg HJ, Peak A, Perera A, Alekseyev YO, Beckloff N, Bivens NJ, Donnelly R, Gillaspy AF, Grove D, Gu W, Jafari N, Kerley-Hamilton JS, Lyons RH, Tepper C, Nicolet CM (2015 Apr). Evaluation of commercially available RNA amplification kits for RNA sequencing using very low input amounts of total RNA. PMID: 25649271.

19.) Ericsson AC, Davis JW, Spollen W, Bivens N, Givan S, Hagan CE, McIntosh M, Franklin CL (2015). Effects of vendor and genetic background on the composition of the fecal microbiota of inbred mice. PMID: 25675094.

20.) Jiang H, Whitworth KM, Bivens NJ, Ries JE, Woods RJ, Forrester LJ, Springer GK, Mathialagan N, Agca C, Prather RS, Lucy MC (2004 Dec). Large-scale generation and analysis of expressed sequence tags from porcine ovary. PMID: 15306552.

21.) Whitworth K, Springer GK, Forrester LJ, Spollen WG, Ries J, Lamberson WR, Bivens N, Murphy CN, Mathialagan N, Green JA, Prather RS (2004 Oct). Developmental expression of 2489 gene clusters during pig embryogenesis: an expressed sequence tag project. PMID: 15175238.

(To see more facility information, click the in the upper right)

Associations

MWACD

Midwest Association of Core Directors

ABRF

Association of Biomolecular Resource Facilities

(To see more facility information, click the in the upper right)

Metadata

Links

All the links listed resolve to this core listing

https://coremarketplace.org/?FacilityID=363
https://coremarketplace.org/RRID:SCR_017778

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

Genomic, DNA, Illumina, sequencing, Sanger, fragment, analysis, 10x Genomics, Core Marketplace

Resource Type:

Resource, service resource, core facility, access service resource

Citation:

University of Missouri-Columbia DNA Core Facility (RRID:SCR_017778)

(To see more facility information, click the in the upper right)

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DNA Core Facility (Genomics / Genome Analysis and Technologies)

Facility Details

About This Facility

Services and Equipment

Publications

Associations

Metadata

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