New York University School of Medicine
Cytometry and Cell Sorting Laboratory Editor
New York University
550 First Avenue Medical Science Building Rm 379
New York, NY 10016
https://med.nyu.edu/research/scientific-cores-shared-resources/experimental-pathology-research-laboratory
RRID: RRID:SCR_017928
Other Citation IdentifiersP30CA016087
Histology
Image Processing And Analysis
Immunohistochemistry
1.) Aggarwal SD, Lokken-Toyli KL, Weiser JN (2024 Dec 6). Pneumococcal pneumonia is driven by increased bacterial turnover due to bacteriocin-mediated intra-strain competition Communications Biology, 7(), 1628. . PMCID: 11621112.
2.) Maiti G, Frikeche J, Loomis C, Chakravarti S (2024 Oct 23). Paracrine regulations of IFN-γ secreting CD4 (+) T cells by lumican and biglycan are protective in allergic contact dermatitis. bioRxiv : the preprint server for biology, (), . . PMID: 39484444.
3.) Duarte Afonso Serdan T, Cervantes H, Frank B, Tian Q, Choi CH, Hoffmann A, Cohen P, Blüher M, Schwartz GJ, Shamsi F (2024 Sep 26). Slit3 Fragments Orchestrate Neurovascular Expansion and Thermogenesis in Brown Adipose Tissue bioRxiv, (), 2024.09.24.613949. . PMCID: 11463466.
4.) Karz A, Coudray N, Bayraktar E, Galbraith K, Jour G, Shadaloey AAS, Eskow N, Rubanov A, Navarro M, Moubarak R, Baptiste G, Levinson G, Mezzano V, Alu M, Loomis C, Lima D, Rubens A, Jilaveanu L, Tsirigos A, Hernando E (2024 Sep 10). MetFinder: A Tool for Automated Quantitation of Metastatic Burden in Histological Sections From Preclinical Models. Pigment cell & melanoma research, (), . doi: 10.1111/pcmr.13195. PMID: 39254030.
5.) Molenaars M, Mir H, Alvarez SW, Arivazhagan L, Rosselot C, Zhan D, Park CY, Garcia-Ocana A, Schmidt AM, Possemato R (2024 Aug 19). Acute inhibition of iron-sulfur cluster biosynthesis disrupts metabolic flexibility in mice. bioRxiv : the preprint server for biology, (), . . PMID: 39229169.
6.) Ulrich RJ, Podkowik M, Tierce R, Irnov I, Putzel G, Samhadaneh N, Lacey KA, Boff D, Morales SM, Makita S, Karagounis TK, Zwack EE, Zhou C, Kim R, Drlica K, Pironti A, van Bakel H, Torres VJ, Shopsin B (2024 Apr 17). Prophage-encoded methyltransferase drives adaptation of community-acquired methicillin-resistant Staphylococcus aureus bioRxiv, (), 2024.04.17.589803. . PMCID: 11042277.
7.) Ortigoza MB, Mobini CL, Rocha HL, Bartlett S, Loomis CA, Weiser JN (2024 Jan 11). Inhibiting influenza virus transmission using a broadly acting neuraminidase that targets host sialic acids in the upper respiratory tract mBio, 15(2), e02203-23. . PMCID: 10865980.
8.) Encarnación-Rosado J, Sohn ASW, Biancur DE, Lin EY, Osorio-Vasquez V, Rodrick T, González-Baerga D, Zhao E, Yokoyama Y, Simeone DM, Jones DR, Parker SJ, Wild R, Kimmelman AC (2024 Jan). Targeting pancreatic cancer metabolic dependencies through glutamine antagonism. Nature cancer, 5(1), 85-99. . PMID: 37814010.
9.) Samper N, Hardardottir L, Depierreux DM, Song SC, Nakazawa A, Gando I, Nakamura TY, Sharkey AM, Nowosad CR, Feske S, Colucci F, Coetzee WA (2024). Kir6.1, a component of an ATP-sensitive potassium channel, regulates natural killer cell development. Frontiers in immunology, 15(), 1490250. . PMID: 39687626.
10.) Zhang W, Golynker I, Brosh R, Fajardo A, Zhu Y, Wudzinska AM, Ordoñez R, Ribeiro-dos-Santos AM, Carrau L, Damani-Yokota P, Yeung ST, Khairallah C, Vela Gartner A, Chalhoub N, Huang E, Ashe HJ, Khanna KM, Maurano MT, Kim SY, tenOever BR, Boeke JD (2023 Nov 1). Mouse genome rewriting and tailoring of three important disease loci Nature, 623(7986), 423-431. . PMCID: 10632133.
11.) Noval MG, Spector SN, Bartnicki E, Izzo F, Narula N, Yeung ST, Damani-Yokota P, Dewan MZ, Mezzano V, Rodriguez-Rodriguez BA, Loomis C, Khanna KM, Stapleford KA (2023 Aug 3). MAVS signaling is required for preventing persistent chikungunya heart infection and chronic vascular tissue inflammation Nature Communications, 14(), 4668. . PMCID: 10400619.
12.) Durmus N, Chen WC, Park SH, Marsh LM, Kwon S, Nolan A, Grunig G (2023 Jul 25). Resistin-like Molecule α and Pulmonary Vascular Remodeling: A Multi-Strain Murine Model of Antigen and Urban Ambient Particulate Matter Co-Exposure International Journal of Molecular Sciences, 24(15), 11918. . PMCID: 10418630.
13.) Glytsou C, Chen X, Zacharioudakis E, Al-Santli W, Zhou H, Nadorp B, Lee S, Lasry A, Sun Z, Papaioannou D, Cammer M, Wang K, Zal T, Zal MA, Carter BZ, Ishizawa J, Tibes R, Tsirigos A, Andreeff M, Gavathiotis E, Aifantis I (2023 Jul 7). Mitophagy Promotes Resistance to BH3 Mimetics in Acute Myeloid Leukemia. Cancer discovery, 13(7), 1656-1677. . PMID: 37088914.
14.) Tu NH, Inoue K, Lewis PK, Khan A, Hwang JH, Chokshi V, Dabovic BB, Selvaraj S, Bhattacharya A, Dubeykovskaya Z, Pinkerton NM, Bunnett NW, Loomis CA, Albertson DG, Schmidt BL (2023 Jun 21). Calcitonin Related Polypeptide Alpha Mediates Oral Cancer Pain Cells, 12(13), 1675. . PMCID: 10341289.
15.) Ortigoza MB, Mobini CL, Rocha HL, Bartlett S, Loomis CA, Weiser JN (2023 Jun 3). Targeting host sialic acids in the upper respiratory tract with a broadly-acting neuraminidase to inhibit influenza virus transmission bioRxiv, (), 2023.06.02.543524. . PMCID: 10312619.
16.) Rodriguez-Rodriguez BA, Ciabattoni GO, Duerr R, Valero-Jimenez AM, Yeung ST, Crosse KM, Schinlever AR, Bernard-Raichon L, Rodriguez Galvan J, McGrath ME, Vashee S, Xue Y, Loomis CA, Khanna KM, Cadwell K, Desvignes L, Frieman MB, Ortigoza MB, Dittmann M (2023 May 25). A neonatal mouse model characterizes transmissibility of SARS-CoV-2 variants and reveals a role for ORF8. Nature communications, 14(1), 3026. . PMID: 37230979.
17.) Sun Q, Lee W, Hu H, Ogawa T, De Leon S, Katehis I, Lim CH, Takeo M, Cammer M, Taketo MM, Gay DL, Millar SE, Ito M (2023 Apr 19). Dedifferentiation maintains melanocyte stem cells in a dynamic niche Nature, 616(7958), 774-782. . PMCID: 10132989.
18.) Wang YH, Noyer L, Kahlfuss S, Raphael D, Tao AY, Kaufmann U, Zhu J, Mitchell-Flack M, Sidhu I, Zhou F, Vaeth M, Thomas PG, Saunders SP, Stauderman K, Curotto de Lafaille MA, Feske S (2022 Oct 7). Distinct roles of ORAI1 in T cell–mediated allergic airway inflammation and immunity to influenza A virus infection Science Advances, 8(40), eabn6552. . PMCID: 9544339.
19.) Guo Y, Xu F, Thomas SC, Zhang Y, Paul B, Sakilam S, Chae S, Li P, Almeter C, Kamer AR, Arora P, Graves DT, Saxena D, Li X (2022 Sep 20). Targeting the succinate receptor effectively inhibits periodontitis. Cell reports, 40(12), 111389. . PMID: 36130514.
20.) Kleffman K, Levinson G, Rose IVL, Blumenberg LM, Shadaloey SAA, Dhabaria A, Wong E, Galán-Echevarría F, Karz A, Argibay D, Von Itter R, Floristán A, Baptiste G, Eskow NM, Tranos JA, Chen J, Vega Y Saenz de Miera EC, Call M, Rogers R, Jour G, Wadghiri YZ, Osman I, Li YM, Mathews P, DeMattos RB, Ueberheide B, Ruggles KV, Liddelow SA, Schneider RJ, Hernando E (2022 May 2). Melanoma-Secreted Amyloid Beta Suppresses Neuroinflammation and Promotes Brain Metastasis. Cancer discovery, 12(5), 1314-1335. . PMID: 35262173.
Core provides services, access to instruments, and training to facilitate production of animal tissue samples for morphological and molecular analyses. Supports multiplex immunofluorescence staining, RNA in situ hybridization (ISH), and imaging analysis. \\nServices include tissue preparation, processing, and sectioning, as well as histochemistry and immunohistochemistry of fresh, frozen, and fixed animal tissues, can optimize and validate commercial or proprietary antibodies for chromogenic or fluorescence-based immunohistochemistry including seven-color multiplexing.Provides access to database listing antibodies that have been tested in lab to date and are currently in stock.Offers basic imaging resources and digital whole-slide scanning of stained tissue sections, which allows researchers to view their slides online at their convenience.Researchers can also rent our self-service instruments. These include embedding station, microtome, cryostat, and vibratome. Provides access to brightfield and fluorescence upright and dissecting microscopes,laser capture microdissection scope, and high-throughput multispectral imaging system.To reserve time on instrument, faculty, staff, and investigators must be registered in iLab.
