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Northwestern University Single Cell Genomics Core Facility

Northwestern University

Contact Info:

Clark Rosensweig

2205 Tech Drive

Evanston, IL 60208

https://sites.northwestern.edu/singlecellgenomics/

Grants and Identifiers:

RRID: RRID:SCR_026652

Instrumentation:

BD FACSDiscover S8

Cell Sorter, equipped with 5 lasers (355, 405, 488, 561 and 640 nm excitation wavelengths) and 78 channels which can measure the entire emission spectra of the fluorescent dyes, is the first spectral flow cytometer sorter with sort-capable image analysis. [Product Link]

RRID:SCR_026674

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BD LSRFortessa Cell Analyzer

BD LSRFortessa system can be configured with up to 7 lasers, blue, red, violet, UV and yellow-green. The instrument can accommodate the detection of up to 18 colors simultaneously with defined set of optical filters that meet or exceed the majority of today's assay requirements. BD FACSDiva software controls the efficient setup, acquisition, and analysis of flow cytometry data from the BD LSRFortessa workstation. The software is common across BD FACS instrument families, including the BD FACSCanto cell analyzer and BD FACSAria cell sorter systems. [Product Link]

RRID:SCR_018655

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Life Technologies QuantStudio 3 Real Time PCR System

Applied Biosystems QuantStudio 3 Real-Time PCR System is designed for users who need an , easy-to-use real-time PCR system that doesn't compromise performance and quality. The simplified Design and Analysis software is best for both first-time and experienced users. When connected to the Thermo Fisher Cloud, the QuantStudio 3 system provides access to your data wherever and whenever you want. Using OptiFlex technology (featuring 4 coupled channels and white LED) and featuring three independent Veriflex temperature zones, the QuantStudio 3 system enables improved data accuracy and sensitivity for a broad range of genomic applications. [Product Link]

RRID:SCR_020238

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Zeiss Axio Vert series Axiovert 200 inverted microscope

Inverted microscope that is used for the examination of cell and tissue culture of sediments in culture flasks, Petri dishes, microtiter plates, etc. in transmitted and reflected light. It hass attachment possibilities for various tools (micromanipulation), different light sources, temperature control devices. [Product Link]

RRID:SCR_020915

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Epredia NX70 Cryostar

Cryostat

Revvity Cellometer K2

Automated Fluorescence-based Cell Counter

Thermo Fisher Nanodrop One

Spectrophotometer

Thermo Fisher Qubit 4

Fluorometer for quantitation of nucleic acids and proteins

Vizgen Merscope

Spatial transcriptomics platform using MERFISH technology

Services Provided:

10X Genomics Single Cell

Bulk RNA Library Prep Services

Cell Sorting

Cryostat Training

Flow Cytometric Analysis

Flow Cytometry Training

Low Input/Single Cell Library Prep Services

Nucleic Acid Extraction

Nucleic Acid Quantitation (TapeStation, Qubit)

Protein Quantitation (Qubit)

Real-time QPCR

Single Nucleus Dissociation (Frozen)

Vizgen MERSCOPE

Relevant Publications:

1.) Frederick J, Virk RK, Ye IC, Almassalha LM, Wodarcyk GM, VanDerway D, Gong R, Dunton CL, Kuo T, Medina KI, Loxas M, Ahrendsen JT, Gursel DB, Gonzalez PC, Nap RJ, John S, Agrawal V, Anthony NM, Carinato J, Li WS, Kakkaramadam R, Jain S, Shahabi S, Ameer GA, Szleifer IG, Backman V (2025 Jul 22). Leveraging chromatin packing domains to target chemoevasion in vivo Proceedings of the National Academy of Sciences of the United States of America, 122(30), e2425319122. . PMCID: 12318189.


2.) Boucher JD, Stranford DM, Edelstein HI, Tullman-Ercek D, Kamat NP, Leonard JN (2025 Jul 4). Distinguishing Protein and Gene Delivery Enables Characterization and Bioengineering of Extracellular Vesicle-Adeno-Associated Virus Vectors bioRxiv, (), 2025.07.02.662894. . PMCID: 12236470.


Description:

A Northwestern University core facility dedicated to supporting single cell and spatial biology experiments on the Evanston campus. Also the home of flow cytometry operations for the Evanston campus.