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QB3 Cell and Tissue Analysis Facility

University of California Berkeley

Contact Info:

Mary West

UC Berkeley, QB3

B129 Stanley Hall

Berkeley, CA 94720-3220

https://qb3.berkeley.edu/facility/ctaf-htsf/

Grants and Identifiers:

RRID: RRID:SCR_023741

Instrumentation:

Bio-Rad CFX96 Real-Time PCR Detection System

The CFX96 Touch System is a real-time PCR detection system that combines optical technology with temperature control. This six-channel (five colors and one FRET channel) real-time PCR instrument combines advanced optical technology with precise temperature control to deliver sensitive, reliable detection for singlexplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on the integrated LCD touch screen, or use the included CFX Maestro Software to easily and intuitively design your experiment and analyze results from a connected computer. With up to five-target detection, thermal cycler performance, unrivaled stand-alone functionality, and easy-to-use software, the CFX96 Touch System is designed to advance your qPCR. [Product Link]

RRID:SCR_018064

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BioTek Lionheart FX Automated Microscope

Microscope that offers up to 60x air; 60x and 100x oil immersion magnification, with fluorescence, brightfield, color brightfield, and phase contrast channels for maximum application reach. [Product Link]

RRID:SCR_019744

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Bruker Ultima 2Pplus Multiphoton Microscope

Multiphoton microscope that is designed for intravital imaging, with fully motorized control of objective X-Y-Z position, as well as two axes of rotation for precise imaging orientation. Second scan path enables simultaneous imaging and photoactivation. [Product Link]

RRID:SCR_019798

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(Equipment No Longer Active At this Facility)

Thermo Fisher Attune Nxt Nxt

2020 Attune NxT Flow Cytometer makes multiparametric flow cytometry available to both new and experienced researchers. [Product Link]

RRID:SCR_019590

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BioRad BioPlex MAGPIX

Luminex XMap Imaged based reader

BioRad Genepulser XCell

Electroporation system for yeast, bacteria, and mammalian cells

Biospherix Hypoxia Chambers

2 chambers for hypoxic conditions, separately controlled

Bruker Swept-Field Confocal

Upright confocal with water immersion objectives

Epredia Cryostar NX50

Cryosectioning with disinfection for human samples

Epredia HM 430 Sliding Microtome

Sliding Microtome for fresh samples and freezing stage

Millipore Direct Detect

Protein, lipid, detergent concentration

Molecular Devices ImageXpress High Content Imaging System

Automated Wide-field Microscope

Nanocellect Wolf G2 Sorter

2 laser cell sorter, bulk or single cell into multiwell plates

ThermoFisher ATTUNE NXT AF CYT(LASERS:BRVY)

4 laser flow cytometer with autosampler

Services Provided:

10x Genomics Visium

Assay Development

Automated Liquid Handling

Brightfield Microscopy

Cell Culture

Cell Imaging

Cold Storage

Confocal Microscopy

Cryostat Histology

Flow Cytometry

Flow Cytometry Data Analysis

H&E Staining

Histology

Image Aquisition

Image Data Management

Image Processing And Analysis

Immunofluorescence

IPS Cell Reprogramming

Live Cell Imaging

Luminex Bead Based Cytokine Assays

Microscopy

Molecular Imaging

Multi-color Flow Cytometry

Multiphoton Microscopy

Multiplex Fluorescence

Multiplexed Immunofluorescence

Paraffin Embedding

Phase Contrast Microscopy

Plate Reader

Processing & Embedding- Histology

Real-time qPCR

Scanning 20X Fluorescent

Scanning 40X Fluorescent

Shared Instrumentation Oversight & Maintenance

Single Particle Extracellular Vesicle Flow Cytometry

Single-molecule Imaging

Spectroscopy

Stereomicroscopy

Tissue Culture

Tissue Embed

Tissue Extraction

Tissue Processing

Training

UV-Vis Spectroscopy

Whole Slide Imaging

Widefield Microscopy

Relevant Publications:

Description:

The QB3 Cell and Tissue Analysis Facility provides cell culture equipment and instrumentation needed to grow and assess mammalian cells including flow cytometry, hypoxia chambers, automated epifluorescence, confocal, and multiphoton microscopy, as well as a histology suite with cryosectioning equipment.