Salk Institute for Biological Studies
Jolene Diedrich
http://www.salk.edu/science/core-facilities/mass-spectrometry-core/
RRID: RRID:SCR_014843
1.) Podder I, Pesqué D, Carrón N, González Torres PI, Pujol RM, Giménez-Arnau AM (2025 Jan). Gut microbial alteration in chronic spontaneous urticaria unresponsive to second generation antihistamines and its correlation with disease characteristics- a cross-sectional case-control study. Clinical and translational allergy, 15(1), e70027. . PMID: 39809718.
2.) Lin M, Bacher H, Bourgault R, Qiao P, Matschi S, Vasquez MF, Mohammadi M, van Boerdonk S, Scanlon MJ, Smith LG, Molina I, Gore MA (2024 Oct 10). Integrative multi-omic analysis identifies genes associated with cuticular wax biogenesis in adult maize leaves. G3 (Bethesda, Md.), 14(12), . . PMID: 39387497.
3.) Sobieraj E, Goławski J, Sikora A, Duda-Duma Ł, Korzeń M, Pasek O, Pyzio K, Gańczak M (2024 Apr 19). Knowledge and preventive practices regarding COVID-19 disease among Ukrainian refugees in Poland. Medicine, 103(16), e37833. . PMID: 38640299.
4.) Logan JJ, Sawada M, Knudby A, Ramsay T, Blanford JI, Ogden NH, Kulkarni MA (2024 Mar 20). Knowledge, protective behaviours, and perception of Lyme disease in an area of emerging risk: results from a cross-sectional survey of adults in Ottawa, Ontario. BMC public health, 24(1), 867. . PMID: 38509528.
5.) Yoshida M, Matsuzaki J, Fujita K, Kimura M, Umezu T, Tokuda N, Yamaguchi T, Kuroda M, Ochiya T, Saito Y, Kimura K (2024 Mar 15). Plasma extracellular vesicle microRNAs reflecting the therapeutic effect of the CBP/β-catenin inhibitor PRI-724 in patients with liver cirrhosis. Scientific reports, 14(1), 6266. . PMID: 38491114.
6.) Regan M, Li Y, Swartwood NA, Barham T, Asay GRB, Cohen T, Hill AN, Horsburgh CR, Khan A, Marks SM, Myles RL, Salomon JA, Self JL, Menzies NA (2024 Jan). Racial and ethnic disparities in diagnosis and treatment outcomes among US-born people diagnosed with tuberculosis, 2003-19: an analysis of national surveillance data. The Lancet. Public health, 9(1), e47-e56. . PMID: 38176842.
7.) Thao DH, Dinh TH, Mitsunaga S, Duy D, Phuong NT, Anh NP, Anh NT, Duc BM, Hue HTT, Ha NH, Ton ND, Hübner A, Pakendorf B, Stoneking M, Inoue I, Duong NT, Hai NV (2024). Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam. PloS one, 19(6), e0304964. . PMID: 38885215.
8.) Hachtel H, Deuring G, Graf M, Vogel T (2024). Impact of psychosocial stress on facial emotion recognition in schizophrenia and controls: an experimental study in a forensic sample. Frontiers in psychiatry, 15(), 1358291. . PMID: 39081531.
9.) Santos JL, Ebert D (2023 Dec). The limits of stress-tolerance for zooplankton resting stages in freshwater ponds. Oecologia, 203(3), 453-465. . PMID: 37971560.
10.) Roche S, Crombé A, Benhamed A, Hak JF, Dabadie A, Fauconnier-Fatus C, Rega A, Pech-Gourg G, Tazarourte K, Seux M, Acquier A, Gorincour G (2023 May 1). Risk Factors Associated with Traumatic Brain Injury and Implementation of Guidelines for Requesting Computed Tomography After Head Trauma Among Children in France. JAMA network open, 6(5), e2311092. . PMID: 37129895.
11.) Ghosh TS, Shanahan F, O'Toole PW (2022 Nov). Toward an improved definition of a healthy microbiome for healthy aging. Nature aging, 2(11), 1054-1069. . PMID: 37118093.
12.) Tivey EKL, Martin JE, Brown SM, Bombail V, Lawrence AB, Meddle SL (2022 Sep 12). Sex differences in 50 kHz call subtypes emitted during tickling-induced playful behaviour in rats. Scientific reports, 12(1), 15323. . PMID: 36097035.
13.) Ventin-Holmberg R, Höyhtyä M, Saqib S, Korpela K, Nikkonen A, Salonen A, de Vos WM, Kolho KL (2022 Apr 22). The gut fungal and bacterial microbiota in pediatric patients with inflammatory bowel disease introduced to treatment with anti-tumor necrosis factor-α. Scientific reports, 12(1), 6654. . PMID: 35459927.
14.) Bennedbæk M, Button MSF, Nielsen LB, Bybjerg-Grauholm J, Wiid Svarrer C, Møller KL, Kristensen B, Legarth R, Gunalan V, Zenas DR, Irshad I, Gubbels S, Sieber RN, Stegger M, Valentiner-Branth P, Rasmussen M, Møller CH, Fonager J, Moller FT (2022 Mar 23). Increased transmission of SARS-CoV-2 in Denmark during UEFA European championships. Epidemiology and infection, 150(), e123. . PMID: 35317884.
15.) Owens CE, Huffard HG, Nin-Velez AI, Duncan J, Teets CL, Daniels KM, Ealy AD, James RE, Knowlton KF, Cockrum RR (2021 Jul 26). Microbiomes of Various Maternal Body Systems Are Predictive of Calf Digestive Bacterial Ecology. Animals : an open access journal from MDPI, 11(8), . . PMID: 34438668.
16.) Amikura K, Ito H, Kitazawa MS (2021 Jul 5). Discovery of spatial pattern of prickles on stem of Rosa hybrida 'Red Queen' and mathematical model of the pattern. Scientific reports, 11(1), 13857. . PMID: 34226577.
17.) Wu D, Tanaka R, Li X, Ramstein GP, Cu S, Hamilton JP, Buell CR, Stangoulis J, Rocheford T, Gore MA (2021 Apr 15). High-resolution genome-wide association study pinpoints metal transporter and chelator genes involved in the genetic control of element levels in maize grain. G3 (Bethesda, Md.), 11(4), . . PMID: 33677522.
18.) De Bruyn L, Gyselings R, Kirkpatrick L, Rachwald A, Apoznański G, Kokurewicz T (2021 Jan 14). Temperature driven hibernation site use in the Western barbastelle Barbastella barbastellus (Schreber, 1774). Scientific reports, 11(1), 1464. . PMID: 33446821.
19.) Opgenoorth L, Hofmann S, Schmidt J (2021). Rewinding the molecular clock in the genus Carabus (Coleoptera: Carabidae) in light of fossil evidence and the Gondwana split: A reanalysis. PloS one, 16(9), e0256679. . PMID: 34550988.
20.) Launay C, Félix MA, Dieng J, Delattre M (2020 Aug 18). Diversification and hybrid incompatibility in auto-pseudogamous species of Mesorhabditis nematodes. BMC evolutionary biology, 20(1), 105. . PMID: 32811433.
21.) Shahbazi MN, Wang T, Tao X, Weatherbee BAT, Sun L, Zhan Y, Keller L, Smith GD, Pellicer A, Scott RT Jr, Seli E, Zernicka-Goetz M (2020 Aug 10). Developmental potential of aneuploid human embryos cultured beyond implantation. Nature communications, 11(1), 3987. . PMID: 32778678.
22.) Castaño-Sánchez A, Hose GC, Reboleira ASPS (2020 Jul 23). Salinity and temperature increase impact groundwater crustaceans. Scientific reports, 10(1), 12328. . PMID: 32704064.
23.) Urman JM, Herranz JM, Uriarte I, Rullán M, Oyón D, González B, Fernandez-Urién I, Carrascosa J, Bolado F, Zabalza L, Arechederra M, Alvarez-Sola G, Colyn L, Latasa MU, Puchades-Carrasco L, Pineda-Lucena A, Iraburu MJ, Iruarrizaga-Lejarreta M, Alonso C, Sangro B, Purroy A, Gil I, Carmona L, Cubero FJ, Martínez-Chantar ML, Banales JM, Romero MR, Macias RIR, Monte MJ, Marín JJG, Vila JJ, Corrales FJ, Berasain C, Fernández-Barrena MG, Avila MA (2020 Jun 21). Pilot Multi-Omic Analysis of Human Bile from Benign and Malignant Biliary Strictures: A Machine-Learning Approach. Cancers, 12(6), . . PMID: 32575903.
24.) Panov J, Simchi L, Feuermann Y, Kaphzan H (2020 Jun 10). Bioinformatics Analyses of the Transcriptome Reveal Ube3a-Dependent Effects on Mitochondrial-Related Pathways. International journal of molecular sciences, 21(11), . . PMID: 32532103.
25.) Ony MA, Nowicki M, Boggess SL, Klingeman WE, Zobel JM, Trigiano RN, Hadziabdic D (2020 Apr). Habitat fragmentation influences genetic diversity and differentiation: Fine-scale population structure of Cercis canadensis (eastern redbud). Ecology and evolution, 10(8), 3655-3670. . PMID: 32313625.
26.) Hagenbeek FA, Pool R, van Dongen J, Draisma HHM, Jan Hottenga J, Willemsen G, Abdellaoui A, Fedko IO, den Braber A, Visser PJ, de Geus EJCN, Willems van Dijk K, Verhoeven A, Suchiman HE, Beekman M, Slagboom PE, van Duijn CM, Harms AC, Hankemeier T, Bartels M, Nivard MG, Boomsma DI (2020 Jan 7). Heritability estimates for 361 blood metabolites across 40 genome-wide association studies. Nature communications, 11(1), 39. . PMID: 31911595.
27.) Ivan FX, Kwoh CK (2019 Dec 24). Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice. BMC genomics, 20(), 973. . PMID: 31874643.
28.) Grabowski P, Hesse S, Hollizeck S, Rohlfs M, Behrends U, Sherkat R, Tamary H, Ünal E, Somech R, Patıroğlu T, Canzar S, van der Werff Ten Bosch J, Klein C, Rappsilber J (2019 Apr). Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition. Molecular & cellular proteomics : MCP, 18(4), 760-772. . PMID: 30630937.
29.) Oh DH, Dassanayake M (2019 Feb 1). Landscape of gene transposition-duplication within the Brassicaceae family. DNA research : an international journal for rapid publication of reports on genes and genomes, 26(1), 21-36. . PMID: 30380026.
30.) Drozd-Dąbrowska M, Topczewska K, Korzeń M, Sałacka A, Ganczak M (2019 Jan 18). Parental Knowledge about Meningococcal Disease and Vaccination Uptake among 0⁻5 years Old Polish Children. International journal of environmental research and public health, 16(2), . . PMID: 30669259.
31.) Phillips YF, Towsey M, Roe P (2018). Revealing the ecological content of long-duration audio-recordings of the environment through clustering and visualisation. PloS one, 13(3), e0193345. . PMID: 29494629.
32.) Sallé G, Cortet J, Bois I, Dubès C, Guyot-Sionest Q, Larrieu C, Landrin V, Majorel G, Wittreck S, Woringer E, Couroucé A, Guillot J, Jacquiet P, Guégnard F, Blanchard A, Leblond A (2017 Dec). Risk factor analysis of equine strongyle resistance to anthelmintics. International journal for parasitology. Drugs and drug resistance, 7(3), 407-415. . PMID: 29149701.
33.) Ganczak M, Gil K, Korzeń M, Bażydło M (2017 Jun 20). Coverage and Influencing Determinants of Influenza Vaccination in Elderly Patients in a Country with a Poor Vaccination Implementation. International journal of environmental research and public health, 14(6), . . PMID: 28632192.
34.) Duroc Y, Kumar R, Ranjha L, Adam C, Guérois R, Md Muntaz K, Marsolier-Kergoat MC, Dingli F, Laureau R, Loew D, Llorente B, Charbonnier JB, Cejka P, Borde V (2017 Jan 4). Concerted action of the MutLβ heterodimer and Mer3 helicase regulates the global extent of meiotic gene conversion. eLife, 6(), . . PMID: 28051769.
35.) Vai S, Ghirotto S, Pilli E, Tassi F, Lari M, Rizzi E, Matas-Lalueza L, Ramirez O, Lalueza-Fox C, Achilli A, Olivieri A, Torroni A, Lancioni H, Giostra C, Bedini E, Pejrani Baricco L, Matullo G, Di Gaetano C, Piazza A, Veeramah K, Geary P, Caramelli D, Barbujani G (2015). Genealogical relationships between early medieval and modern inhabitants of Piedmont. PloS one, 10(1), e0116801. . PMID: 25635682.
36.) Marco-Rius F, Caballero P, Morán P, Garcia de Leaniz C (2012). And the last shall be first: heterochrony and compensatory marine growth in sea trout (Salmo trutta). PloS one, 7(10), e45528. . PMID: 23049680.
Core facilty that provides access and services for analyzing targeted and complex mixtures of protein and small molecules, like metabolites. By utilizing these tools, research on disease states can be augmented by proteomic and metabolomic study.
