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UMass Chan - SCOPE

University of Massachusetts Medical School

Contact Info:

Christina Baer

55 North Lake Ave

Worcester, MA 01655

https://www.umassmed.edu/scope/

Grants and Identifiers:

RRID: RRID:SCR_022721

Instrumentation:

(Equipment No Longer Active At this Facility)

Agilent Seahorse XFe96 Analyzer

Seahorse XFe96 Analyzer measures OCR and ECAR of live cells in 96 well plate format. [Product Link]

RRID:SCR_019545

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(Equipment No Longer Active At this Facility)

Essen Incucyte Incucyte

IncuCyte ZOOM system is a live-cell imaging and analysis platform that enables automated quantification of cell behavior over time (from hours to weeks) by automatically gathering and analyzing images around the clock. The system provides insight into active biological processes in real-time which is not possible using single-point and end-point measurements. The system resides within the controlled environment of a standard cell incubator. All imaging is completely non-invasive and non-perturbing to cell health. The system can process multiple plates, flasks and dishes in parallel and does not depend on shuttling plates into and out of the incubator. [Product Link]

RRID:SCR_019874

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(Equipment No Longer Active At this Facility)

Leica TCS SP5 Broadband Confocal Laser Scanning Microscope

Leica TCS SP5 is a broadband confocal microscope that provides the full range of scan speeds at the a high resolution. With its SP detection (five channels simultaneously) and optional AOBS (Acousto Optical Bream Splitter), the Leica TCS SP5 delivers bright, noise-free images with minimal photo damage at high speed. The system is also the platform for the new Leica DM6000 CFS (Confocal Fixed Stage) for physiological and electrophysiological experiments and for the new super resolution Leica TCS STED confocal microscope. [Product Link]

RRID:SCR_020233

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(Equipment No Longer Active At this Facility)

Nikon A1 Confocal Laser Microscope

Fully automated A1 offers standard paired galvanometers with high resolution scanning at up to 4096 x 4096 pixels. The A1R model incorporates a hybrid scanner system utilizing a high speed resonant galvanometer capable of acquisitions up to 240 frames per second. Both scanners can be used simultaneously for experiments requiring acquisition and photoactivation by concurrently scanning the specimen. This supports advanced research methods using photoactivation fluorescence proteins and facilitates high-speed, live-cell work with a huge array of new imaging strategies. A spectral imaging detector further enables the A1 and A1R models to obtain up to 32 discreet spectral bandwidths of data in one acquisition, with spectral unmixing capabilities. The total system is controlled through NIS-Elements C applications software, which also enables full control of the Nikon Ti-E research inverted microscope equipped with Nikon's Focus System (PFS), widefield CCD cameras and an array of hardware devices. [Product Link]

RRID:SCR_020318

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Services Provided:

Cell Imaging

Confocal Microscopy

Confocal/ Super Resolution Microscope

Consultation

Consultations

Data Analysis

Data Analysis And Interpretation

Data Processing And Interpretation

Deconvolution

Experimental Design

Fluorescence Lifetime

Image Aquisition

Image Data Management

In-vivo Imaging

Microscopy

Multiphoton Microscopy

Multiphoton/ Harmonic Generation Microscope

Nanostring

NanoString GeoMx DSP

Optical Imaging

Scanning 20X Brightfield

Scanning 20X Fluorescent

Scanning 40X Brightfield

Scanning 40X Fluorescent

Slide Scanning

STED Nanoscopy

Vizgen MERSCOPE

Relevant Publications:

1.) Bazzone LE, Zhu J, King M, Liu G, Guo Z, MacKay CR, Kyawe PP, Qaisar N, Rojas-Quintero J, Owen CA, Brass AL, McDougall W, Baer CE, Cashman T, Trivedi CM, Gack MU, Finberg RW, Kurt-Jones EA (2024 May 16). ADAM9 promotes type I interferon-mediated innate immunity during encephalomyocarditis virus infection. Nature communications, 15(1), 4153. . PMID: 38755212.


2.) Shakiba S, Haddadi NS, Afshari K, Lubov JE, Raef HS, Li R, Yildiz-Altay Ü, Daga M, Refat MA, Kim E, de Laflin JG, Akabane A, Sherman S, MacDonald E, Strassner JP, Zhang L, Leon M, Baer CE, Dresser K, Liang Y, Whitley JB, Skopelja-Gardner S, Harris JE, Deng A, Vesely MD, Rashighi M, Richmond J (2024 Jan 6). Spatial characterization of interface dermatitis in cutaneous lupus reveals novel chemokine ligand-receptor pairs that drive disease bioRxiv, (), 2024.01.05.574422. . PMCID: 10802382.


3.) Smullen M, Olson MN, Reichert JM, Dawes P, Murray LF, Baer CE, Wang Q, Readhead B, Church GM, Lim ET, Chan Y (2023 Sep 25). Reliable multiplex generation of pooled induced pluripotent stem cells. Cell reports methods, 3(9), 100570. . PMID: 37751688.


4.) Lotun A, Li D, Xu H, Su Q, Tuncer S, Sanmiguel J, Mooney M, Baer CE, Ulbrich R, Eyles SJ, Strittmatter L, Hayward LJ, Gessler DJ, Gao G (2023 Jul). Renewal of oligodendrocyte lineage reverses dysmyelination and CNS neurodegeneration through corrected N-acetylaspartate metabolism. Progress in neurobiology, 226(), 102460. . PMID: 37149081.


5.) Chibaya L, Murphy KC, DeMarco KD, Gopalan S, Liu H, Parikh CN, Lopez-Diaz Y, Faulkner M, Li J, Morris JP IV, Ho YJ, Chana SK, Simon J, Luan W, Kulick A, de Stanchina E, Simin K, Zhu LJ, Fazzio TG, Lowe SW, Ruscetti M (2023 May 4). EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance Nature cancer, 4(6), 872-892. . PMCID: 10516132.


Description:

Sanderson Center for Optical Experimentation (SCOPE) at UMass Chan Medical School offers the tools and expertise required to perform a wide variety of quantitative microscopy techniques including super resolution imaging, multi-photon intravital and live tissue imaging, confocal microscopy, and high-speed time-lapse imaging. The SCOPE offers a combination of commercial and custom-built microscopes, allowing users to address an extensive array of biological questions. In addition to user training and access to light microscopes, the SCOPE offers a wide range of imaging services including whole slide scanning, MERFISH spatial transcriptomics, NanoString GeoMx DSP services, and image analysis support. Wet lab facilities, including cell culture, are also available in this BSL2 facility. Imaging at BSL3 is available upon request. We offer remote imaging and data analysis sessions, including remote control of all instruments and workstations. All users are trained individually prior to use of the SCOPE equipment and workstations. Access for external users can be arranged following a consultation regarding project scope and expected outcomes with the Director.