University of California, Berkeley

Contact Info:

David Skinner

1 Cyclotron Road

Berkeley

Berkeley, CA 94720

https://www.nersc.gov

Grants and Identifiers:

RRID: RRID:SCR_021318

DE-AC02-05CH11231

Instrumentation:

Services Provided:

3D Visualization

Computational - Biostatistics

Computational - High Performance Computing

Data Analysis

Data Processing And Interpretation

Discovery Science

Distributed Workflow Support

Genomics

High Performance Computing

HPSS

Modeling And Simulation

X-ray Diffraction and Scattering

Relevant Publications:

1.) Zhou Z, Riley R, Kautsar S, Wu W, Egan R, Hofmeyr S, Goldhaber-Gordon S, Yu M, Ho H, Liu F, Chen F, Morgan-Kiss R, Shi L, Liu H, Wang Z (2025 Feb 5). GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies. bioRxiv : the preprint server for biology, (), . . PMID: 39975405.

2.) Yu Q, Ascensao JA, Okada T, Boyd O, Volz E, Hallatschek O (2024 Apr). Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England. PLoS pathogens, 20(4), e1012090. . PMID: 38620033.

3.) Lui LM, Nielsen TN, Arkin AP (2021 May). A method for achieving complete microbial genomes and improving bins from metagenomics data. PLoS computational biology, 17(5), e1008972. . PMID: 33961626.

Description:

The National Energy Research Scientific Computing Center, or NERSC, is a high performance computing (supercomputer) user facility operated by Lawrence Berkeley National Laboratory for the United States Department of Energy Office of Science. As the mission computing center for the Office of Science, NERSC houses high performance computing and data systems used by 7,000 scientists at national laboratories and universities around the country.