The CoreMarketplace: W.M. Keck Metabolomics Research Laboratory

W.M. Keck Metabolomics Research Laboratory (Metabolomics) RRID:SCR_017911	Iowa State University Ames, IA 50011	Amino Acid Analysis, Biochemical Analysis, HPLC, Lipidomics, Mass Spectrometry, Metabolomics, Metabolomics Platform, Molecular Imaging, Untargeted Mass Spectrometry, Imaging Mass Spectrometry, HRAM Mass Spectrometry, HRAM Mass Spectro	Last Updated: 02/05/2024
Protein Facility (Proteomics) RRID:SCR_017780	Iowa State University Ames, IA 50011	2D-PAGE, Glycoproteomics, HPLC, Mass Spectrometry, Peptide Synthesis, Phosphoproteomics, Phosphor Imaging, Protein Extraction/Purification, Proteomics, SDS-PAGE, Sequencing - Protein Sequencing, Western Blot, Peptide Purification And Analysis, Mass Spectrometry - Proteins And Peptides, Proteomics Analysis, Quantitative Phosphoproteomics, Quantitative Proteomics - TMT	Last Updated: 08/25/2023
Hybridoma Facility (Antibody Development) RRID:SCR_018829	Iowa State University Ames, IA 50011	Assays and Measurements, Cell Culture, Monoclonal Antibody, Tissue Culture	Last Updated: 07/20/2020
Genome Informatics Facility RRID:SCR_017790	Iowa State University Ames, IA 50011	Computational - Bioinformatics, Computational - Biostatistics, Computational - High Performance Computing, Data Analysis, Genomics, RNA analysis, Sequencing - DNA Sequencing, Sequencing - Next Generation Sequencing (NGS)	Last Updated: 10/01/2019
DNA Facility	Iowa State University Ames, IA 50011	DNA Analysis, Genomics, Genotyping, Molecular Library Services, Nucleic Acid Extraction, oligo synthesis, Real-time qPCR, Sequencing - Capillary Sequencing, Sequencing - DNA Sequencing, Sequencing - Next Generation Sequencing (NGS)	Last Updated: 10/16/2017

Iowa State University

0124 Molecular Biology Building

2437 Pammel Drive

Ames, IA 50011

United States of America

https://www.biotech.iastate.edu/metabolomics/

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Primary Contact:

MRL Staff

Last Updated: 02/05/2024

Facility RRID

RRID:SCR_017911

Facility Details

The W.M. Keck Metabolomics Research Laboratory focuses on GC-MS and LC-MS based non-targeted (total) and custom targeted metabolomic studies as well as high resolution MALDI-MS imaging.

Facility Policies

Services are offerred outside of Iowa State University

Consulting is offerred outside of Iowa State University

Services offered:

Amino Acid Analysis

Biochemical Analysis

HPLC

HRAM Mass Spectrometry

Imaging Mass Spectrometry

Lipidomics

Mass Spectrometry

Mass Spectrometry - Small Molecules

Metabolomics

Metabolomics Platform

Molecular Imaging

Untargeted Mass Spectrometry

Facility Equipment

Agilent 5975C Gas Chromatography Mass Spectrometer

Gas Chromatography Mass Spectrometer is used to meet challenges faced by today's polymer analyst. [Product Link]

RRID:SCR_019415

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Agilent 6470 Triple Quadrupole Liquid Chromatography Mass Spectrometer System

Triple quadrupole LC/MS system for commercial, regulatory, life sciences, and research applications. It has Agilent Jet Stream ion source and curved geometry collision cell. It detects target compounds at low levels in diverse matrices, while achieving wide linear dynamic range. [Product Link]

RRID:SCR_019421

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Agilent 7250 GC/Q-TOF

GC/Q-TOF delivers full spectrum, resolution, and mass data with wide range for identifying and quantifying GC amenable compounds. [Product Link]

RRID:SCR_019441

Citation IDs: SCR_017788

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Agilent 1200 HPLC

Agilent Technologies 1200 Series four solvent gradient capable HPLC coupled to Agilent 1200 series: UV capable diode array detector (DAD), fluorescence detector (FLD), and an evaporative light scattering detector (ELSD). This instrument is equipped with a thermostatically controlled column compartment and auto sampler.

Agilent 6540 LC-QTOF

This mass spectrometer provides ultra-high-definition mass accuracy and mass resolution due to Agilent’s Ion Beam Compression (IBC) and Enhanced Mirror Technology (EMT). Most importantly this Q-TOF possesses the ability to quickly generate accurate mass MS and MS/MS data with UHPLC. This is the perfect system for qualitative analysis in metabolomics profiling studies.

Agilent 7890A GC

Detection and quantification of GC compatible metabolites from various biological samples with a Flame Ionization Detector. APPLICATIONS INCLUDE: High throughput seed fatty acid profile Fatty acid profile from plant or animal tissues, for example muscle and adipose.

BioTek Synergy 2 Multi-Mode Microplate Reader

The Synergy 2 Multi-Mode Microplate Reader has the ability to assay optically active molecules via luminescence, fluorescence, fluorescence polarization and UV-Vis absorbance (monochromator-based).

No additional equipment has been listed

Publications

Publications associated with this facility (Click To View):

1.) Meyer C, Grego E, S Vasanthi S, Rao NS, Massey N, Holtkamp C, Huss J, Showman L, Narasimhan B, Thippeswamy T (2023 Nov 30). The NADPH Oxidase Inhibitor, Mitoapocynin, Mitigates DFP-Induced Reactive Astrogliosis in a Rat Model of Organophosphate Neurotoxicity. Antioxidants (Basel, Switzerland), 12(12), . . PMID: 38136181.

2.) Vasanthi SS, Rao NS, Samidurai M, Massey N, Meyer C, Gage M, Kharate M, Almanza A, Wachter L, Mafuta C, Trevino L, Carlo AM, Bryant E, Corson BE, Wohlgemuth M, Ostrander M, Showman L, Wang C, Thippeswamy T (2023 Jul 12). Disease-modifying effects of a glial-targeted inducible nitric oxide synthase inhibitor (1400W) in mixed-sex cohorts of a rat soman (GD) model of epilepsy. Journal of neuroinflammation, 20(1), 163. . ID: 37438764.

3.) Vasanthi SS, Massey N, Nair SN, Mochel JP, Showman L, Thippeswamy T (2023). Exploring the benefits of in-diet versus repeated oral dosing of saracatinib (AZD0530) in chronic studies: insights into pharmacokinetics and animal welfare. Frontiers in veterinary science, 10(), 1297221. . ID: 38026620.

4.) Sirotiak Z, Gallagher BT, Smith-Hernandez CA, Showman LJ, Hillard CJ, Brellenthin AG (2023). Endocannabinoid and psychological responses to acute resistance exercise in trained and untrained adults. PloS one, 18(12), e0291845. . ID: 38039265.

5.) Vinithakumari AA, Padhi P, Hernandez B, Lin SJ, Dunkerson-Kurzhumov A, Showman L, Breitzman M, Stokes C, Sulaiman Y, Tangudu C, Kuttappan DA, Muyyarikkandy MS, Willette AA, Phillips GJ, Anantharam V, Perera A, Sponseller BA, Kanthasamy A, Mooyottu S (2022 Apr 27). Clostridioides difficile Infection Dysregulates Brain Dopamine Metabolism. Microbiology spectrum, 10(2), e0007322. . PMID: 35323033.

6.) Kiefer ZE, Koester LR, Showman L, Studer JM, Chipman AL, Keating AF, Schmitz-Esser S, Ross JW (2021 Mar 17). Vaginal microbiome and serum metabolite differences in late gestation commercial sows at risk for pelvic organ prolapse. Scientific reports, 11(1), 6189. . ID: 33731737.

7.) Aboobucker SI, Showman LJ, Lübberstedt T, Suza WP (2021). Maize Zmcyp710a8 Mutant as a Tool to Decipher the Function of Stigmasterol in Plant Metabolism. Frontiers in plant science, 12(), 732216. . PMID: 34804084.

8.) Campbell AA, Stenback KE, Flyckt K, Hoang T, Perera MAD, Nikolau BJ (2019). A single-cell platform for reconstituting and characterizing fatty acid elongase component enzymes. PloS one, 14(3), e0213620. . ID: 30856216.

9.) Phillips FC, Jensen GS, Showman L, Tonda R, Horst G, Levine R (2019). Particulate and solubilized β-glucan and non-β-glucan fractions of Euglena gracilis induce pro-and anti-inflammatory innate immune cell responses and exhibit antioxidant properties. Journal of inflammation research, 12(), 49-64. . ID: 30881080.

10.) Sharma S, Carlson S, Puttachary S, Sarkar S, Showman L, Putra M, Kanthasamy AG, Thippeswamy T (2018 Feb). Role of the Fyn-PKCδ signaling in SE-induced neuroinflammation and epileptogenesis in experimental models of temporal lobe epilepsy. Neurobiology of disease, 110(), 102-121. . ID: 29197620.

11.) Bhunia RK, Showman LJ, Jose A, Nikolau BJ (2018). Combined use of cutinase and high-resolution mass-spectrometry to query the molecular architecture of cutin. Plant methods, 14(), 117. . PMID: 30603042.

12.) Rizhsky L, Jin H, Shepard MR, Scott HW, Teitgen AM, Perera MA, Mhaske V, Jose A, Zheng X, Crispin M, Wurtele ES, Jones D, Hur M, Góngora-Castillo E, Buell CR, Minto RE, Nikolau BJ (2016 Dec). Integrating metabolomics and transcriptomics data to discover a biocatalyst that can generate the amine precursors for alkamide biosynthesis. The Plant journal : for cell and molecular biology, 88(5), 775-793. . PMID: 27497272.

13.) Bi H, Luang S, Li Y, Bazanova N, Morran S, Song Z, Perera MA, Hrmova M, Borisjuk N, Lopato S (2016 Oct). Identification and characterization of wheat drought-responsive MYB transcription factors involved in the regulation of cuticle biosynthesis. Journal of experimental botany, 67(18), 5363-5380. . ID: 27489236.

14.) Wiesen LB, Bender RL, Paradis T, Larson A, Perera MADN, Nikolau BJ, Olszewski NE, Carter CJ (2016 May 2). A Role for GIBBERELLIN 2-OXIDASE6 and Gibberellins in Regulating Nectar Production. Molecular plant, 9(5), 753-756. doi: 10.1016/j.molp.2015.12.019. ID: 26748313.

15.) Noutsos C, Perera AM, Nikolau BJ, Seaver SM, Ware DH (2015). Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis. PloS one, 10(5), e0124501. . ID: 25933103.

16.) Noutsos C, Perera AM, Nikolau BJ, Seaver SM, Ware DH (2015). Correction: Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis. PloS one, 10(10), e0141384. . ID: 26492042.

17.) Senchina DS, Hallam JE, Kohut ML, Nguyen NA, Perera MA (2014). Alkaloids and athlete immune function: caffeine, theophylline, gingerol, ephedrine, and their congeners. Exercise immunology review, 20(), 68-93. . ID: 24974722.

18.) Bender RL, Fekete ML, Klinkenberg PM, Hampton M, Bauer B, Malecha M, Lindgren K, A Maki J, Perera MA, Nikolau BJ, Carter CJ (2013 Jun). PIN6 is required for nectary auxin response and short stamen development. The Plant journal : for cell and molecular biology, 74(6), 893-904. doi: 10.1111/tpj.12184. ID: 23551385.

19.) Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ (2012). Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Frontiers in plant science, 3(), 15. . ID: 22645570.

20.) Muhlemann JK, Maeda H, Chang CY, San Miguel P, Baxter I, Cooper B, Perera MA, Nikolau BJ, Vitek O, Morgan JA, Dudareva N (2012). Developmental changes in the metabolic network of snapdragon flowers. PloS one, 7(7), e40381. . ID: 22808147.

21.) Chen Y, Apolinario E, Brachova L, Kelman Z, Li Z, Nikolau BJ, Showman L, Sowers K, Orban J (2011 Jun 15). A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans. BMC genomics, 12(), S7. . ID: 21810209.

22.) Senchina DS, Strauch JH, Hoffmann GB, Shah NB, Laflen BK, Dumke BL, Dao CT, Dias AS, Perera MA (2011 Apr). Phytochemical and immunomodulatory properties of an Echinacea laevigata (Asteraceae) tincture. Journal of alternative and complementary medicine (New York, N.Y.), 17(4), 375-7. doi: 10.1089/acm.2010.0373. ID: 21473700.

23.) Perera MA, Qin W, Yandeau-Nelson M, Fan L, Dixon P, Nikolau BJ (2010 Nov). Biological origins of normal-chain hydrocarbons: a pathway model based on cuticular wax analyses of maize silks. The Plant journal : for cell and molecular biology, 64(4), 618-32. doi: 10.1111/j.1365-313X.2010.04355.x. ID: 21070415.

24.) Perera MA, Choi SY, Wurtele ES, Nikolau BJ (2009 Feb 15). Quantitative analysis of short-chain acyl-coenzymeAs in plant tissues by LC-MS-MS electrospray ionization method. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences, 877(5), 482-8. doi: 10.1016/j.jchromb.2008.12.053. PMID: 19157998.

25.) Kram BW, Bainbridge EA, Perera MA, Carter C (2008 Sep). Identification, cloning and characterization of a GDSL lipase secreted into the nectar of Jacaranda mimosifolia. Plant molecular biology, 68(1), 173-83. doi: 10.1007/s11103-008-9361-1. ID: 18553138.

26.) Nikolau BJ, Perera MA, Brachova L, Shanks B (2008 May). Platform biochemicals for a biorenewable chemical industry. The Plant journal : for cell and molecular biology, 54(4), 536-45. doi: 10.1111/j.1365-313X.2008.03484.x. ID: 18476861.

27.) Dietrich CR, Perera MA, D Yandeau-Nelson M, Meeley RB, Nikolau BJ, Schnable PS (2005 Jun). Characterization of two GL8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. The Plant journal : for cell and molecular biology, 42(6), 844-61. . ID: 15941398.

28.) Senchina DS, Hallam JE, Dias AS, Perera MA (2009 Nov-Dec). Human blood mononuclear cell in vitro cytokine response before and after two different strenuous exercise bouts in the presence of bloodroot and Echinacea extracts. Blood cells, molecules & diseases, 43(3), 298-303. doi: 10.1016/j.bcmd.2009.08.003. ID: 19766513.

29.) Sebbag L, Showman L, McDowell EM, Perera A, Mochel JP (2018 Jul/Aug). Impact of Flow Rate, Collection Devices, and Extraction Methods on Tear Concentrations Following Oral Administration of Doxycycline in Dogs and Cats. Journal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics, 34(6), 452-459. . ID: 29708819.

Associations

ABRF

Association of Biomolecular Resource Facilities

MWACD

Midwest Association of Core Directors

Metadata

Links

All the links listed resolve to this core profile

https://coremarketplace.org/?FacilityID=796
https://coremarketplace.org/RRID:SCR_017911

Institution

Institution ROR ID: https://ror.org/04rswrd78

SciCrunch Data Imports (data maintained by https://scicrunch.org)

Keywords:

Metabolomics, Non-targeted, Metabolite Profiling, Targeted Metabolomics, mass spectrometry imaging, direct infusion, HPLC, calillary, electrophoresis, data, analysis, service, core

Resource Type:

access service resource, service resource, core facility

Citation:

Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility (RRID:SCR_017911)

W.M. Keck Metabolomics Research Laboratory (Metabolomics)

Primary Contact:

Facility RRID

Facility Details

Facility Policies

(To see more facility information, click the in the upper right)

Services offered:

Facility Equipment

(To see more facility information, click the in the upper right)

Publications

(To see more facility information, click the in the upper right)

Associations

ABRF

MWACD

(To see more facility information, click the in the upper right)

Metadata

SciCrunch Data Imports (data maintained by https://scicrunch.org)

(To see more facility information, click the in the upper right)

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